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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179390 (5 seq.)
>W131193341
ASOC01000007
Unclassified
Candidatus Omnitrophus fodinae OP3 bacterium SCGC AAA011-A17 [ASOC]
17109
17186
+
His
GTG
[ENA]
¡û
>W1711417262
MHFA01000074
Unclassified
Omnitrophica bacterium GWA2_50_21 [MHFA]
5170
5093
-
His
GTG
[ENA]
¡û
>WENV180250908
OBEQ010323165
[OBEQ] groundwater metagenome; groundwater
12128
12203
+
His
GTG
[ENA]
¡û
>WENV180267705
OBEQ011884700
[OBEQ] groundwater metagenome; groundwater
2166
2243
+
His
GTG
[ENA]
¡û
>WENV183686411
ORMF010996656
[ORMF] groundwater metagenome; groundwater
29106
29029
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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