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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179475 (16 seq.)
>W1710914095
LNTA01000144
Gammaproteobacteria
Xanthomonas translucens [LNTA]
570
646
+
Arg
ACG
[ENA]
¡û
>C171050497
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
4056783
4056707
-
Arg
ACG
-
¡û
>C171050498
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
4056653
4056577
-
Arg
ACG
-
¡û
>C171128933
LT604072
Gammaproteobacteria
Xanthomonas translucens pv. translucens DSM 18974 [LT604072]
2744086
2744162
+
Arg
ACG
-
¡û
>W131243928
CAPJ01000093
Gammaproteobacteria
Xanthomonas translucens pv. translucens DSM 18974 [CAPJ]
2109
2185
+
Arg
ACG
[ENA]
¡û
>WENV183738781
PJUE01000188
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
50488
50412
-
Arg
ACG
[ENA]
¢þ
>WENV183738782
PJUE01000188
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
50358
50282
-
Arg
ACG
[ENA]
¢þ
>WENV183740003
PJUF01000131
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
28415
28339
-
Arg
ACG
[ENA]
¢þ
>WENV183740004
PJUF01000131
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
28285
28209
-
Arg
ACG
[ENA]
¢þ
>C161070295
CP014274
Gammaproteobacteria
Stenotrophomonas sp. KCTC 12332 YM1 [CP014274]
2422058
2422134
+
Arg
ACG
[Ensembl]
¡û
>C161070296
CP014274
Gammaproteobacteria
Stenotrophomonas sp. KCTC 12332 YM1 [CP014274]
2422188
2422264
+
Arg
ACG
[Ensembl]
¡û
>W1610586926
LDJJ01000027
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
66534
66610
+
Arg
ACG
[ENA]
¡û
>W1610586927
LDJJ01000027
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
66664
66740
+
Arg
ACG
[ENA]
¡û
>W1610772454
LNTA01000144
Gammaproteobacteria
Xanthomonas translucens [LNTA]
570
646
+
Arg
ACG
[ENA]
¡û
>W1710706056
LDJJ01000027
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
66534
66610
+
Arg
ACG
[ENA]
¡û
>W1710706057
LDJJ01000027
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
66664
66740
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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