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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179643 (7 seq.)
>C018810
CP000686
Chloroflexota
Roseiflexus sp. RS-1 [CP000686]
5722495
5722571
+
Glu
TTC
[Ensembl]
¡û
>w019847
AAUM01000020
Chloroflexota
Roseiflexus castenholzii DSM 13941 [AAUM]
42032
42110
+
Glu
TTC
[ENA]
¡û
>WENV180014731
FQKF010117831
[FQKF] soil metagenome; Soil
1110
1034
-
Glu
TTC
[ENA]
¡û
>C08008083
CP000804
Chloroflexota
Roseiflexus castenholzii DSM 13941 [CP000804]
133844
133920
+
Glu
TTC
[Ensembl]
¡û
>WENV170000571
AFSR01000414
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
8139
8063
-
Glu
TTC
[ENA]
¡û
>W09105829
AAQU01000001
Chloroflexota
Roseiflexus sp. RS-1 [AAQU]
614742
614818
+
Glu
TTC
[ENA]
¡û
>WENV11100914
AFSR01000414
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
8139
8063
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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