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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179695 (68 seq.)
>W1710864845
LMGE01000017
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
168944
168868
-
Arg
CCT
[ENA]
¡û
>W1710865501
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
510382
510306
-
Arg
CCT
[ENA]
¡û
>W1710866475
LMHM01000013
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
574823
574747
-
Arg
CCT
[ENA]
¡û
>W1710868961
LMJN01000003
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
78508
78584
+
Arg
CCT
[ENA]
¡û
>W1710869019
LMJO01000017
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
173782
173858
+
Arg
CCT
[ENA]
¡û
>W131244885
CAQP01000093
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
5834
5910
+
Arg
CCT
[ENA]
¡û
>W1711384937
MEDO01000001
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
58708
58632
-
Arg
CCT
[ENA]
¡û
>W1711387185
MEGJ01000037
Gammaproteobacteria
Rhodanobacter sp. SCN 69-32 [MEGJ]
205208
205132
-
Arg
CCT
[ENA]
¡û
>W1711506075
MKWC01000004
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
212783
212859
+
Arg
CCT
[ENA]
¡û
>W1711711501
MTAY01000034
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
65823
65747
-
Arg
CCT
[ENA]
¡û
>W141094288
AVCJ01000001
Gammaproteobacteria
Arenimonas donghaensis DSM 18148 = HO3-R19 [AVCJ]
38638
38562
-
Arg
CCT
[ENA]
¡û
>WENV181308020
OFIS01000114
[OFIS] sludge metagenome; sludge
17364
17288
-
Arg
CCT
[ENA]
¡û
>WENV181401408
OFTX01000125
[OFTX] sludge metagenome; sludge
28450
28526
+
Arg
CCT
[ENA]
¡û
>WENV181402138
OFTY01000152
[OFTY] sludge metagenome; sludge
53184
53108
-
Arg
CCT
[ENA]
¡û
>W141282853
JAJA01000028
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
74293
74217
-
Arg
CCT
[ENA]
¡û
>WENV182938470
OKVD01014271
[OKVD] human gut metagenome; human gut
237
161
-
Arg
CCT
[ENA]
¡û
>WENV182941822
OKVG01009399
[OKVG] human gut metagenome; human gut
1751
1675
-
Arg
CCT
[ENA]
¡û
>WENV182952200
OKVV01013311
[OKVV] human gut metagenome; human gut
434
358
-
Arg
CCT
[ENA]
¡û
>WENV170574468
FLYM01042443
[FLYM] hot springs metagenome; Sediment
794
718
-
Arg
CCT
[ENA]
¡û
>C181021695
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
3577979
3578055
+
Arg
CCT
-
¡û
>C181081814
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
3850357
3850433
+
Arg
CCT
-
¡û
>C181185987
CP029843
Gammaproteobacteria
Lysobacter maris HZ9B [CP029843]
2467512
2467588
+
Arg
CCT
-
¡û
>C191181084
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
2084367
2084291
-
Arg
CCT
-
¡û
>C191189074
CP041242
Gammaproteobacteria
Lysobacter alkalisoli SJ-36 [CP041242]
2415220
2415296
+
Arg
CCT
-
¡û
>W141713927
JMTZ01000086
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
19839
19915
+
Arg
CCT
[ENA]
¡û
>W1810860384
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
463018
462942
-
Arg
CCT
[ENA]
¡û
>W2010717816
JACHYJ010000002
Gammaproteobacteria
Luteimonas sp. RC10 [JACHYJ]
7957
8033
+
Arg
CCT
[ENA]
¡û
>W2010986240
NJIC01000001
Gammaproteobacteria
Rhodanobacter sp. PCA2 [NJIC]
158848
158924
+
Arg
CCT
[ENA]
¡û
>W2011403263
RCTY01000045
Gammaproteobacteria
Lysobacter enzymogenes OH11 [RCTY]
22280
22356
+
Arg
CCT
[ENA]
¡û
>W2012132606
VSSP01000001
Gammaproteobacteria
Luteimonas sp. LNNU 24178 [VSSP]
354436
354360
-
Arg
CCT
[ENA]
¡û
>W2012156609
VUOD01000002
Gammaproteobacteria
Arenimonas sp. 3729k [VUOD]
18739
18815
+
Arg
CCT
[ENA]
¡û
>W2110028527
BMKC01000001
Gammaproteobacteria
Arenimonas soli CGMCC 1.15905 [BMKC]
927193
927117
-
Arg
CCT
[ENA]
¡û
>W2110285142
JACXXL010000002
Gammaproteobacteria
Lysobacter capsici VKM B-2533 [JACXXL]
26333
26257
-
Arg
CCT
[ENA]
¡û
>W2110292826
JACYXK010000020
Gammaproteobacteria
Rhodanobacter sp. DHB23 [JACYXK]
140013
139937
-
Arg
CCT
[ENA]
¡û
>W2110292871
JACYXL010000001
Gammaproteobacteria
Rhodanobacter sp. 7MK24 [JACYXL]
633924
634000
+
Arg
CCT
[ENA]
¡û
>W2110292946
JACYXM010000006
Gammaproteobacteria
Rhodanobacter sp. DHG33 [JACYXM]
71721
71797
+
Arg
CCT
[ENA]
¡û
>W2110546151
JAGGRH010000034
Gammaproteobacteria
Lysobacter sp. ISL-42 [JAGGRH]
34048
33972
-
Arg
CCT
[ENA]
¡û
>W2110546248
JAGGRJ010000039
Gammaproteobacteria
Lysobacter sp. ISL-52 [JAGGRJ]
23331
23255
-
Arg
CCT
[ENA]
¡û
>W2110546272
JAGGRK010000010
Gammaproteobacteria
Lysobacter sp. ISL-54 [JAGGRK]
123724
123800
+
Arg
CCT
[ENA]
¡û
>W2110662220
JAHXYJ010000013
Gammaproteobacteria
Lysobacter gummosus EVS02B [JAHXYJ]
2092
2168
+
Arg
CCT
[ENA]
¡û
>W2110662283
JAHXYK010000006
Gammaproteobacteria
Lysobacter sp. ESA13C [JAHXYK]
55773
55697
-
Arg
CCT
[ENA]
¡û
>W2110681100
JAIHOO010000001
Gammaproteobacteria
Lysobacter sp. BMK333-48F3 [JAIHOO]
3388774
3388698
-
Arg
CCT
[ENA]
¡û
>C211238697
CP067395
Gammaproteobacteria
Lysobacter enzymogenes CX03 [CP067395]
5910179
5910103
-
Arg
CCT
-
¡û
>C211310409
CP072597
Gammaproteobacteria
Lysobacter sp. K5869 [CP072597]
4924464
4924540
+
Arg
CCT
-
¡û
>C211342489
CP076103
Gammaproteobacteria
Lysobacter capsici NF87_2 [CP076103]
3870498
3870574
+
Arg
CCT
-
¡û
>C231113160
CP067396
Gammaproteobacteria
Lysobacter enzymogenes CX06 [CP067396]
4005491
4005567
+
Arg
CCT
-
¡û
>W2110747776
LXSD01000078
Gammaproteobacteria
Lysobacter enzymogenes 521 [LXSD]
3185
3109
-
Arg
CCT
[ENA]
¡û
>C231266514
CP089924
Gammaproteobacteria
Lysobacter sp. 5GHs7-4 [CP089924]
2022327
2022251
-
Arg
CCT
-
¡û
>C231332267
CP093340
Gammaproteobacteria
Luteimonas sp. S4-F44 [CP093340]
1954542
1954618
+
Arg
CCT
-
¡û
>C231335042
CP093547
Gammaproteobacteria
Lysobacter gummosus 10.1.1 [CP093547]
1969113
1969037
-
Arg
CCT
-
¡û
>C231343435
CP094357
Gammaproteobacteria
Lysobacter capsici VKM B-2533 [CP094357]
3809517
3809593
+
Arg
CCT
-
¡û
>C231537671
CP110813
Gammaproteobacteria
Lysobacter enzymogenes B25 [CP110813]
4318260
4318336
+
Arg
CCT
-
¡û
>C241317277
CP134269
Gammaproteobacteria
Lysobacter capsici XL2 [CP134269]
3824116
3824192
+
Arg
CCT
-
¡û
>W1511582544
LASZ01000003
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
214415
214339
-
Arg
CCT
[ENA]
¡û
>W1511595024
LBMI01000007
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
264809
264885
+
Arg
CCT
[ENA]
¡û
>C161031561
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
3981077
3981153
+
Arg
CCT
[Ensembl]
¡û
>C161052067
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
1887350
1887274
-
Arg
CCT
[Ensembl]
¡û
>C161052081
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
5060260
5060336
+
Arg
CCT
-
¡û
>W1610727191
LMGE01000017
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
168944
168868
-
Arg
CCT
[ENA]
¡û
>W1610727847
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
510382
510306
-
Arg
CCT
[ENA]
¡û
>W1610728476
LMHF01000014
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
407200
407124
-
Arg
CCT
[ENA]
¡û
>W1610728821
LMHM01000013
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
574823
574747
-
Arg
CCT
[ENA]
¡û
>W1610729957
LMIK01000008
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
78513
78589
+
Arg
CCT
[ENA]
¡û
>W1610730964
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
520908
520832
-
Arg
CCT
[ENA]
¡û
>W1610731307
LMJN01000003
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
78508
78584
+
Arg
CCT
[ENA]
¡û
>W1610731365
LMJO01000017
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
173782
173858
+
Arg
CCT
[ENA]
¡û
>W1710531723
FNPT01000002
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
420888
420812
-
Arg
CCT
[ENA]
¡û
>W1710567393
FOSS01000002
Gammaproteobacteria
Lysobacter sp. cf310 [FOSS]
492141
492217
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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