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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179727 (118 seq.)
>W1710855699
LLYZ01000003
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
308073
307997
-
Thr
TGT
[ENA]
¡û
>W1710855702
LLYZ01000003
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
307647
307571
-
Thr
TGT
[ENA]
¡û
>W1710857472
LMAH01000006
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
283148
283072
-
Thr
TGT
[ENA]
¡û
>W1710857475
LMAH01000006
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
282727
282651
-
Thr
TGT
[ENA]
¡û
>W1710857498
LMAI01000003
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
337153
337077
-
Thr
TGT
[ENA]
¡û
>W1710857501
LMAI01000003
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
336729
336653
-
Thr
TGT
[ENA]
¡û
>W1710876607
LMPJ01000008
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
59336
59263
-
Thr
TGT
[ENA]
¡û
>W1711072017
LSHB01000073
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
567
493
-
Thr
TGT
[ENA]
¡û
>W131220963
AUAA01000047
Bacteroidota
Epilithonimonas tenax DSM 16811 [AUAA]
10455
10381
-
Thr
TGT
[ENA]
¡û
>W131235280
AULL01000012
Bacteroidota
Kaistella palustris DSM 21579 [AULL]
443013
443087
+
Thr
TGT
[ENA]
¡û
>W1712082016
NHOS01000002
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
109910
109984
+
Thr
TGT
[ENA]
¡û
>W141291529
JASZ01000012
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
4313
4387
+
Thr
TGT
[ENA]
¡û
>WENV183706712
PDWI01005240
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
19588
19662
+
Thr
TGT
[ENA]
¢þ
>WENV183718060
PDWJ01002287
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
20311
20385
+
Thr
TGT
[ENA]
¢þ
>C191099921
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
3049383
3049457
+
Thr
TGT
-
¡û
>C191099924
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
3049808
3049882
+
Thr
TGT
-
¡û
>C191115373
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
911621
911547
-
Thr
TGT
-
¡û
>C191115376
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
911192
911118
-
Thr
TGT
-
¡û
>C191115487
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
2068884
2068958
+
Thr
TGT
-
¡û
>C191115547
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
92821
92895
+
Thr
TGT
-
¡û
>C191116080
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
3258401
3258475
+
Thr
TGT
-
¡û
>C191116083
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
3258828
3258902
+
Thr
TGT
-
¡û
>C191116144
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
4030445
4030371
-
Thr
TGT
-
¡û
>C191116147
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
4030018
4029944
-
Thr
TGT
-
¡û
>C191116452
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
1207440
1207514
+
Thr
TGT
-
¡û
>C191116535
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
4865314
4865388
+
Thr
TGT
-
¡û
>C191116538
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
4865753
4865827
+
Thr
TGT
-
¡û
>C191120435
CP034158
Bacteroidota
Kaistella daneshvariae H3001 [CP034158]
648256
648182
-
Thr
TGT
-
¡û
>C191120462
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
2822046
2822120
+
Thr
TGT
-
¡û
>C191134779
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1877878
1877804
-
Thr
TGT
-
¡û
>C191156051
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
1545607
1545681
+
Thr
TGT
-
¡û
>C191211160
LR134441
Bacteroidota
Kaistella antarctica NCTC13489 [LR134441]
1845154
1845080
-
Thr
TGT
-
¡û
>C191212982
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
2681443
2681517
+
Thr
TGT
-
¡û
>W141802052
JPEP01000002
Bacteroidota
Kaistella antarctica antarcticum [JPEP]
1087927
1088001
+
Thr
TGT
[ENA]
¡û
>W141806176
JPLY01000004
Bacteroidota
Epilithonimonas lactis [JPLY]
398113
398187
+
Thr
TGT
[ENA]
¡û
>W141806212
JPLZ01000006
Bacteroidota
Chryseobacterium sp. FH1 FH1 [JPLZ]
918666
918740
+
Thr
TGT
[ENA]
¡û
>W141809262
JPRI01000010
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
390230
390156
-
Thr
TGT
[ENA]
¡û
>W141809265
JPRI01000010
Bacteroidota
Chryseobacterium vrystaatense [JPRI]
389804
389728
-
Thr
TGT
[ENA]
¡û
>W141809443
JPRN01000001
Bacteroidota
Chryseobacterium sp. JM1 [JPRN]
183576
183650
+
Thr
TGT
[ENA]
¡û
>W141809446
JPRN01000001
Bacteroidota
Chryseobacterium sp. JM1 [JPRN]
184005
184081
+
Thr
TGT
[ENA]
¡û
>W141809516
JPRO01000002
Bacteroidota
Chryseobacterium luteum [JPRO]
127774
127850
+
Thr
TGT
[ENA]
¡û
>W141816659
JQKA01000014
Bacteroidota
Chryseobacterium sp. OV259 [JQKA]
17854
17930
+
Thr
TGT
[ENA]
¡û
>W1910808717
MUGO01000026
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
38658
38732
+
Thr
TGT
[ENA]
¡û
>W1910808720
MUGO01000026
Bacteroidota
Chryseobacterium piscicola DSM 21068 [MUGO]
39084
39158
+
Thr
TGT
[ENA]
¡û
>W1910808773
MUGP01000010
Bacteroidota
Chryseobacterium shigense DSM 17126 [MUGP]
155621
155695
+
Thr
TGT
[ENA]
¡û
>W1910933651
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
475628
475554
-
Thr
TGT
[ENA]
¡û
>C09106198
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
271749
271823
+
Thr
TGT
[Ensembl]
¡û
>W1911701753
QNVS01000087
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
417
491
+
Thr
TGT
[ENA]
¡û
>W1911701759
QNVS01000093
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
13410
13484
+
Thr
TGT
[ENA]
¡û
>W1911701996
QNVW01000004
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
196730
196804
+
Thr
TGT
[ENA]
¡û
>W1911701999
QNVW01000004
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
197168
197242
+
Thr
TGT
[ENA]
¡û
>W1810071769
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
5036810
5036736
-
Thr
TGT
[ENA]
¡û
>W1810071772
PEEX01000001
Bacteroidota
Chryseobacterium sp. 52 [PEEX]
5036387
5036313
-
Thr
TGT
[ENA]
¡û
>W1810193891
PKNN01000030
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
64243
64169
-
Thr
TGT
[ENA]
¡û
>W1810193894
PKNN01000030
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
63807
63733
-
Thr
TGT
[ENA]
¡û
>C151013042
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
1515440
1515514
+
Thr
TGT
[Ensembl]
¡û
>W1511390845
JSYK01000003
Bacteroidota
Kaistella solincola DSM 22468 [JSYK]
66524
66598
+
Thr
TGT
[ENA]
¡û
>W1511390897
JSYL01000010
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
20538
20464
-
Thr
TGT
[ENA]
¡û
>W1511432304
JUGK01000014
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
287059
286983
-
Thr
TGT
[ENA]
¡û
>W1511432307
JUGK01000014
Bacteroidota
Chryseobacterium sp. YR005 [JUGK]
286637
286561
-
Thr
TGT
[ENA]
¡û
>W1511432985
JUGX01000007
Bacteroidota
Chryseobacterium sp. OV715 [JUGX]
44337
44263
-
Thr
TGT
[ENA]
¡û
>W1511592776
LBIQ01000035
Bacteroidota
Mangrovimonas sp. ST2L15 [LBIQ]
173647
173721
+
Thr
TGT
[ENA]
¡û
>W1511592781
LBIQ01000035
Bacteroidota
Mangrovimonas sp. ST2L15 [LBIQ]
191593
191669
+
Thr
TGT
[ENA]
¡û
>W1511699474
LGIP01000002
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
234
310
+
Thr
TGT
[ENA]
¡û
>W1511699481
LGIP01000002
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
256892
256818
-
Thr
TGT
[ENA]
¡û
>C121010269
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
1563799
1563873
+
Thr
TGT
[Ensembl]
¡û
>C161084434
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
2706074
2706148
+
Thr
TGT
[Ensembl]
¡û
>C161084437
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
2706501
2706575
+
Thr
TGT
[Ensembl]
¡û
>W1610029738
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
276809
276883
+
Thr
TGT
[ENA]
¡û
>W1610095099
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
331287
331361
+
Thr
TGT
[ENA]
¡û
>W1610596850
LELA01000112
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
104
28
-
Thr
TGT
[ENA]
¡û
>W1610596859
LELA01000185
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
179
255
+
Thr
TGT
[ENA]
¡û
>W1610597234
LFEG01000130
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
104
28
-
Thr
TGT
[ENA]
¡û
>W1610597242
LFEG01000271
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
104
28
-
Thr
TGT
[ENA]
¡û
>W1610634209
LIRF01000007
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
206501
206575
+
Thr
TGT
[ENA]
¡û
>W1610634212
LIRF01000007
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
206937
207011
+
Thr
TGT
[ENA]
¡û
>W1610718080
LLYZ01000003
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
308073
307997
-
Thr
TGT
[ENA]
¡û
>W1610718083
LLYZ01000003
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
307647
307571
-
Thr
TGT
[ENA]
¡û
>W1610719853
LMAH01000006
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
283148
283072
-
Thr
TGT
[ENA]
¡û
>W1610719856
LMAH01000006
Bacteroidota
Chryseobacterium sp. JAH [LMAH]
282727
282651
-
Thr
TGT
[ENA]
¡û
>W1610719879
LMAI01000003
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
337153
337077
-
Thr
TGT
[ENA]
¡û
>W1610719882
LMAI01000003
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
336729
336653
-
Thr
TGT
[ENA]
¡û
>W1610738953
LMPJ01000008
Bacteroidota
Chryseobacterium sp. Leaf180 [LMPJ]
59336
59263
-
Thr
TGT
[ENA]
¡û
>W1610911277
LSHB01000073
Bacteroidota
Chryseobacterium sp. FP211-J200 J200 [LSHB]
567
493
-
Thr
TGT
[ENA]
¡û
>W1710027108
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
276809
276883
+
Thr
TGT
[ENA]
¡û
>W1710097894
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
331287
331361
+
Thr
TGT
[ENA]
¡û
>W1710538658
FNUS01000004
Bacteroidota
Halpernia humi [FNUS]
128305
128229
-
Thr
TGT
[ENA]
¡û
>W1710550487
FOFI01000001
Bacteroidota
Epilithonimonas lactis [FOFI]
441617
441691
+
Thr
TGT
[ENA]
¡û
>W1710554962
FOIX01000004
Bacteroidota
Kaistella antarctica antarcticum [FOIX]
488142
488068
-
Thr
TGT
[ENA]
¡û
>W1710557457
FOLA01000012
Bacteroidota
Kaistella jeonii [FOLA]
20464
20390
-
Thr
TGT
[ENA]
¡û
>W1710564821
FOQT01000002
Bacteroidota
Halpernia frigidisoli [FOQT]
445464
445390
-
Thr
TGT
[ENA]
¡û
>W1710565955
FORQ01000004
Bacteroidota
Kaistella treverensis treverense [FORQ]
66173
66247
+
Thr
TGT
[ENA]
¡û
>W1710570428
FOVD01000005
Bacteroidota
Chryseobacterium oleae [FOVD]
142115
142041
-
Thr
TGT
[ENA]
¡û
>W1710570431
FOVD01000005
Bacteroidota
Chryseobacterium oleae [FOVD]
141687
141611
-
Thr
TGT
[ENA]
¡û
>W1710582272
FPKW01000019
Bacteroidota
Chryseobacterium limigenitum [FPKW]
79283
79209
-
Thr
TGT
[ENA]
¡û
>W1710582275
FPKW01000019
Bacteroidota
Chryseobacterium limigenitum [FPKW]
78853
78779
-
Thr
TGT
[ENA]
¡û
>W1710582603
FQUD01000001
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
246826
246900
+
Thr
TGT
[ENA]
¡û
>W1710582606
FQUD01000001
Bacteroidota
Chryseobacterium sp. OV279 [FQUD]
247254
247330
+
Thr
TGT
[ENA]
¡û
>W1710583942
FQVE01000007
Bacteroidota
Chryseobacterium vrystaatense YR203 [FQVE]
243371
243447
+
Thr
TGT
[ENA]
¡û
>W1710590267
FRAV01000067
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
6407
6481
+
Thr
TGT
[ENA]
¡û
>W1710590270
FRAV01000067
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
6832
6906
+
Thr
TGT
[ENA]
¡û
>W1710591980
FRCD01000002
Bacteroidota
Chryseobacterium carnipullorum [FRCD]
250660
250736
+
Thr
TGT
[ENA]
¡û
>W1710595013
FSRQ01000005
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
106916
106840
-
Thr
TGT
[ENA]
¡û
>W1710595016
FSRQ01000005
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
106478
106402
-
Thr
TGT
[ENA]
¡û
>W1710595879
FTMF01000005
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
98578
98502
-
Thr
TGT
[ENA]
¡û
>W1710595882
FTMF01000005
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
98151
98075
-
Thr
TGT
[ENA]
¡û
>W1710598371
FTNY01000004
Bacteroidota
Chryseobacterium shigense [FTNY]
630040
629964
-
Thr
TGT
[ENA]
¡û
>W1710598896
FTOI01000001
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
84814
84888
+
Thr
TGT
[ENA]
¡û
>W1710598960
FTOJ01000007
Bacteroidota
Chryseobacterium piscicola [FTOJ]
39872
39948
+
Thr
TGT
[ENA]
¡û
>W1710598963
FTOJ01000007
Bacteroidota
Chryseobacterium piscicola [FTOJ]
40298
40372
+
Thr
TGT
[ENA]
¡û
>W1710603594
FUZE01000025
Bacteroidota
Chryseobacterium balustinum [FUZE]
43001
43077
+
Thr
TGT
[ENA]
¡û
>W1710603597
FUZE01000025
Bacteroidota
Chryseobacterium balustinum [FUZE]
43440
43516
+
Thr
TGT
[ENA]
¡û
>W1710717855
LELA01000112
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
104
28
-
Thr
TGT
[ENA]
¡û
>W1710717864
LELA01000185
Bacteroidota
Chryseobacterium sp. BGARF1 [LELA]
179
255
+
Thr
TGT
[ENA]
¡û
>W1710718558
LFEG01000130
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
104
28
-
Thr
TGT
[ENA]
¡û
>W1710718566
LFEG01000271
Bacteroidota
Chryseobacterium sp. MOF25P [LFEG]
104
28
-
Thr
TGT
[ENA]
¡û
>W1710768586
LIRF01000007
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
206501
206575
+
Thr
TGT
[ENA]
¡û
>W1710768589
LIRF01000007
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
206937
207011
+
Thr
TGT
[ENA]
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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