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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179729 (43 seq.)
>W1710855722
LLYZ01000010
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
6255
6179
-
Lys
TTT
[ENA]
¡û
>W1711132215
LUVZ01000043
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
298810
298734
-
Lys
TTT
[ENA]
¡û
>W1711314218
MAUH01000001
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
315066
315142
+
Lys
TTT
[ENA]
¡û
>W141168444
AXUZ01000016
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
122663
122739
+
Lys
TTT
[ENA]
¡û
>WENV183726236
PJQF01132241
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
306
232
-
Lys
TTT
[ENA]
¢þ
>C181056667
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
4918689
4918765
+
Lys
TTT
-
¡û
>C193003639
LR215974
Bacteroidota
Chryseobacterium taihuense 3012STDY6944375 [LR215974]
1376831
1376757
-
Lys
TTT
-
¡û
>C191099962
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
1430951
1430877
-
Lys
TTT
-
¡û
>C191115688
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
1600153
1600077
-
Lys
TTT
-
¡û
>C191115730
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
3991172
3991248
+
Lys
TTT
-
¡û
>C191116103
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
1884044
1883970
-
Lys
TTT
-
¡û
>C191116123
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
1135044
1135118
+
Lys
TTT
-
¡û
>C191116543
CP033934
Bacteroidota
Chryseobacterium balustinum KC_1863 [CP033934]
3479871
3479797
-
Lys
TTT
-
¡û
>C191209955
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
1077870
1077946
+
Lys
TTT
-
¡û
>W141815897
JQJM01000007
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
133129
133205
+
Lys
TTT
[ENA]
¡û
>W1911218407
NRQS01000007
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
152148
152222
+
Lys
TTT
[ENA]
¡û
>W1911218493
NRQT01000014
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
160
234
+
Lys
TTT
[ENA]
¡û
>W1911566405
PCOU01000029
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
57245
57319
+
Lys
TTT
[ENA]
¡û
>W1911680442
QICI01000103
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
9680
9754
+
Lys
TTT
[ENA]
¡û
>W1911701741
QNVS01000062
Bacteroidota
Chryseobacterium piscium CCUG 51923 [QNVS]
945
1019
+
Lys
TTT
[ENA]
¡û
>W1911701895
QNVU01000033
Bacteroidota
Candidatus Chryseobacterium massiliae massiliae CCUG 51329 [QNVU]
24273
24347
+
Lys
TTT
[ENA]
¡û
>W1911701931
QNVV01000004
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
93790
93714
-
Lys
TTT
[ENA]
¡û
>W1911702027
QNVW01000023
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
38245
38171
-
Lys
TTT
[ENA]
¡û
>W1810193872
PKNN01000008
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
24795
24869
+
Lys
TTT
[ENA]
¡û
>W1810234287
PPEH01000003
Bacteroidota
Chryseobacterium lactis NCTC11390 [PPEH]
348300
348224
-
Lys
TTT
[ENA]
¡û
>W1810475448
QAJA01000773
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
507
581
+
Lys
TTT
[ENA]
¡û
>W1810538598
QDFZ01000009
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
31823
31749
-
Lys
TTT
[ENA]
¡û
>C151002574
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
1126819
1126895
+
Lys
TTT
[Ensembl]
¡û
>W1511432045
JUGG01000008
Bacteroidota
Chryseobacterium sp. YR460 [JUGG]
189959
190035
+
Lys
TTT
[ENA]
¡û
>W1511432212
JUGI01000020
Bacteroidota
Chryseobacterium sp. YR459 [JUGI]
113402
113478
+
Lys
TTT
[ENA]
¡û
>W1511432462
JUGN01000015
Bacteroidota
Chryseobacterium sp. YR480 [JUGN]
120010
120086
+
Lys
TTT
[ENA]
¡û
>W1511432593
JUGP01000008
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
158367
158291
-
Lys
TTT
[ENA]
¡û
>C161084469
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
1077850
1077774
-
Lys
TTT
[Ensembl]
¡û
>W1610634176
LIRF01000004
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
654227
654151
-
Lys
TTT
[ENA]
¡û
>W1610718103
LLYZ01000010
Bacteroidota
Chryseobacterium aquaticum [LLYZ]
6255
6179
-
Lys
TTT
[ENA]
¡û
>W1610943288
LUVZ01000043
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
298810
298734
-
Lys
TTT
[ENA]
¡û
>W1611059093
MAUH01000001
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
315066
315142
+
Lys
TTT
[ENA]
¡û
>W1710582258
FPKW01000014
Bacteroidota
Chryseobacterium limigenitum [FPKW]
15002
15078
+
Lys
TTT
[ENA]
¡û
>W1710590225
FRAV01000009
Bacteroidota
Chryseobacterium polytrichastri [FRAV]
153065
152989
-
Lys
TTT
[ENA]
¡û
>W1710594996
FSRQ01000004
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
25591
25667
+
Lys
TTT
[ENA]
¡û
>W1710595909
FTMF01000021
Bacteroidota
Chryseobacterium indoltheticum [FTMF]
25353
25429
+
Lys
TTT
[ENA]
¡û
>W1710603564
FUZE01000002
Bacteroidota
Chryseobacterium balustinum [FUZE]
391048
390972
-
Lys
TTT
[ENA]
¡û
>W1710768553
LIRF01000004
Bacteroidota
Chryseobacterium sp. ERMR1:04 [LIRF]
654227
654151
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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