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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179730 (64 seq.)
>W131164173
ARAI01000028
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
63193
63269
+
Arg
TCT
[ENA]
¡û
>WENV180360801
OBNU01027426
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
532
458
-
Arg
TCT
[ENA]
¡û
>WENV180698170
ODDE01059408
[ODDE] human metagenome; G_DNA_Supragingival plaque
205
279
+
Arg
TCT
[ENA]
¡û
>WENV180755300
ODHU01080506
[ODHU] human metagenome; G_DNA_Supragingival plaque
105
179
+
Arg
TCT
[ENA]
¡û
>WENV180774910
ODIJ01110026
[ODIJ] human metagenome; G_DNA_Tongue dorsum
328
254
-
Arg
TCT
[ENA]
¡û
>WENV180776804
ODIK01149967
[ODIK] human metagenome; G_DNA_Tongue dorsum
183
109
-
Arg
TCT
[ENA]
¡û
>WENV180806412
ODJH01017376
[ODJH] human metagenome; G_DNA_Tongue dorsum
692
618
-
Arg
TCT
[ENA]
¡û
>WENV180833744
ODKD01000165
[ODKD] human metagenome; G_DNA_Supragingival plaque
378
304
-
Arg
TCT
[ENA]
¡û
>WENV180834321
ODKD01011550
[ODKD] human metagenome; G_DNA_Supragingival plaque
1372
1446
+
Arg
TCT
[ENA]
¡û
>WENV180834519
ODKD01042357
[ODKD] human metagenome; G_DNA_Supragingival plaque
277
203
-
Arg
TCT
[ENA]
¡û
>WENV180844450
ODKN01123523
[ODKN] human metagenome; G_DNA_Supragingival plaque
257
331
+
Arg
TCT
[ENA]
¡û
>WENV180891402
ODMQ01000017
[ODMQ] human metagenome; G_DNA_Supragingival plaque
12436
12362
-
Arg
TCT
[ENA]
¡û
>WENV180901070
ODOJ01029837
[ODOJ] human metagenome; G_DNA_Tongue dorsum
647
573
-
Arg
TCT
[ENA]
¡û
>WENV180931178
ODTP01001815
[ODTP] human metagenome; G_DNA_Tongue dorsum
1413
1487
+
Arg
TCT
[ENA]
¡û
>WENV181005838
ODWA01000024
[ODWA] human metagenome; G_DNA_Buccal mucosa
12038
11964
-
Arg
TCT
[ENA]
¡û
>WENV181120791
OEFK01059344
[OEFK] marine metagenome; ENVO:00002010 seawater
69
143
+
Arg
TCT
[ENA]
¡û
>WENV170466915
CEVE01097487
[CEVE] marine metagenome genome assembly TARA_124_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
274
198
-
Arg
TCT
[ENA]
¡û
>WENV170895001
MDTD01073742
[MDTD] marine metagenome; seawater
64270
64346
+
Arg
TCT
[ENA]
¡û
>WENV170895807
MDTD01085485
[MDTD] marine metagenome; seawater
7730
7654
-
Arg
TCT
[ENA]
¡û
>C181063487
CP022378
Bacteroidota
Capnocytophaga cynodegmi G7591 [CP022378]
2546175
2546249
+
Arg
TCT
-
¡û
>C181063566
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
1950327
1950401
+
Arg
TCT
-
¡û
>C181063613
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
1955041
1955115
+
Arg
TCT
-
¡û
>C181063652
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
530316
530390
+
Arg
TCT
-
¡û
>C181063726
CP022383
Bacteroidota
Capnocytophaga sputigena H4486 [CP022383]
502454
502380
-
Arg
TCT
-
¡û
>C181063898
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
2742914
2742988
+
Arg
TCT
-
¡û
>C181063925
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
532610
532684
+
Arg
TCT
-
¡û
>C181063968
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
503908
503982
+
Arg
TCT
-
¡û
>C181148093
CP027232
Bacteroidota
Capnocytophaga sp. oral taxon 864 F0512 [CP027232]
577127
577201
+
Arg
TCT
-
¡û
>C181188055
CP030104
Bacteroidota
Allomuricauda aurantiaca HME9304 [CP030104]
3074530
3074604
+
Arg
TCT
-
¡û
>C191093543
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
824122
824196
+
Arg
TCT
-
¡û
>C191213468
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
547411
547485
+
Arg
TCT
-
¡û
>W1911239230
NSDI01000001
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
301703
301629
-
Arg
TCT
[ENA]
¡û
>W1810101908
PGTV01000006
Bacteroidota
Capnocytophaga canimorsus DSM 19204 [PGTV]
40656
40730
+
Arg
TCT
[ENA]
¡û
>W2010133608
BLBC01000006
Bacteroidota
Capnocytophaga felis KC07070 [BLBC]
152202
152276
+
Arg
TCT
[ENA]
¡û
>W2010133640
BLBD01000002
Bacteroidota
Capnocytophaga felis KC07105 [BLBD]
201378
201452
+
Arg
TCT
[ENA]
¡û
>W2011065873
NSDI01000001
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
301703
301629
-
Arg
TCT
[ENA]
¡û
>W2011817364
UFUS01000001
Bacteroidota
Capnocytophaga canimorsus NCTC12242 [UFUS]
530316
530390
+
Arg
TCT
[ENA]
¡û
>W2012371260
WLVF01000008
Bacteroidota
Capnocytophaga canimorsus CCUG 17663 [WLVF]
39901
39975
+
Arg
TCT
[ENA]
¡û
>W2012371298
WLVG01000005
Bacteroidota
Capnocytophaga canis CCUG 25240 [WLVG]
198804
198878
+
Arg
TCT
[ENA]
¡û
>W2012371320
WLVH01000003
Bacteroidota
Capnocytophaga canis CCUG 42328 [WLVH]
10056
9982
-
Arg
TCT
[ENA]
¡û
>W2012371373
WLVI01000011
Bacteroidota
Capnocytophaga canis CCUG 38354 [WLVI]
64691
64617
-
Arg
TCT
[ENA]
¡û
>W2012371424
WLVJ01000018
Bacteroidota
Capnocytophaga canis GE-031 [WLVJ]
1757
1831
+
Arg
TCT
[ENA]
¡û
>W2110063290
BOPJ01000006
Bacteroidota
Capnocytophaga stomatis 11058B-1 [BOPJ]
107503
107429
-
Arg
TCT
[ENA]
¡û
>W2110064087
BOQF01000005
Bacteroidota
Capnocytophaga stomatis 11021B-1 [BOQF]
311153
311079
-
Arg
TCT
[ENA]
¡û
>W2110064128
BOQG01000005
Bacteroidota
Capnocytophaga cynodegmi 11019B-1 [BOQG]
301730
301804
+
Arg
TCT
[ENA]
¡û
>W2110064160
BOQH01000001
Bacteroidota
Capnocytophaga cynodegmi 11014B-1 [BOQH]
490937
491011
+
Arg
TCT
[ENA]
¡û
>W2110064216
BOQI01000015
Bacteroidota
Capnocytophaga canimorsus 12161B-4 [BOQI]
1360
1286
-
Arg
TCT
[ENA]
¡û
>W2110064250
BOQJ01000012
Bacteroidota
Capnocytophaga canimorsus 13232B-6 [BOQJ]
19263
19189
-
Arg
TCT
[ENA]
¡û
>W2110064307
BOQK01000037
Bacteroidota
Capnocytophaga canis 13235B-2 [BOQK]
440
514
+
Arg
TCT
[ENA]
¡û
>C211173261
CP063203
Bacteroidota
Marixanthomonas sp. SCSIO 43207 [CP063203]
2377199
2377273
+
Arg
TCT
-
¡û
>W1510076162
CDOD01000026
Bacteroidota
Capnocytophaga cynodegmi Ccyn2B [CDOD]
75243
75319
+
Arg
TCT
[ENA]
¡û
>W1510076174
CDOE01000011
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
6637
6561
-
Arg
TCT
[ENA]
¡û
>W1510076246
CDOF01000079
Bacteroidota
Capnocytophaga cynodegmi Ccyn_ATCC49044 [CDOF]
2309
2233
-
Arg
TCT
[ENA]
¡û
>W1510076260
CDOG01000013
Bacteroidota
Capnocytophaga cynodegmi Ccy74 [CDOG]
63444
63520
+
Arg
TCT
[ENA]
¡û
>W1510076319
CDOH01000126
Bacteroidota
Capnocytophaga canis CcD95 [CDOH]
27895
27821
-
Arg
TCT
[ENA]
¡û
>W1510076337
CDOI01000057
Bacteroidota
Capnocytophaga canis CcD38 [CDOI]
20726
20652
-
Arg
TCT
[ENA]
¡û
>W1510076395
CDOJ01000100
Bacteroidota
Capnocytophaga canimorsus Cc2 [CDOJ]
10204
10280
+
Arg
TCT
[ENA]
¡û
>W1510076438
CDOK01000221
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
1998
1922
-
Arg
TCT
[ENA]
¡û
>W1510076466
CDOL01000226
Bacteroidota
Capnocytophaga canis CcD93 [CDOL]
45489
45565
+
Arg
TCT
[ENA]
¡û
>W2130003569
BOPK01000009
Bacteroidota
Capnocytophaga stomatis 11022B-2 [BOPK]
127336
127410
+
Arg
TCT
[ENA]
¡û
>W2310016517
BQMG01000042
Bacteroidota
Capnocytophaga canimorsus 11068B-5 [BQMG]
8620
8694
+
Arg
TCT
[ENA]
¡û
>W2310016526
BQMH01000001
Bacteroidota
Capnocytophaga cynodegmi 13223B-3 [BQMH]
613808
613734
-
Arg
TCT
[ENA]
¡û
>C11104986
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
1451269
1451345
+
Arg
TCT
[Ensembl]
¡û
>W1710574938
FOYQ01000002
Bacteroidota
Robiginitalea myxolifaciens [FOYQ]
581247
581173
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK