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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179785 (20 seq.)
>C181143149
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
929665
929740
+
Ile
GAT
-
¡û
>C181143180
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1251982
1252057
+
Ile
GAT
-
¡û
>W1810573483
QEKT01000004
Bacillota
Convivina intestini DSM 28795 [QEKT]
134557
134484
-
Ile
GAT
[ENA]
¡û
>C211059763
CP043431
Bacillota
Weissella koreensis SK [CP043431]
888315
888390
+
Ile
GAT
-
¡û
>C211059794
CP043431
Bacillota
Weissella koreensis SK [CP043431]
1210633
1210708
+
Ile
GAT
-
¡û
>C241138617
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1616255
1616180
-
Ile
GAT
-
¡û
>C241138648
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1262224
1262149
-
Ile
GAT
-
¡û
>C241378264
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
907650
907725
+
Ile
GAT
-
¡û
>C241378295
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
1229966
1230041
+
Ile
GAT
-
¡û
>WENV11100353
AEKF01000096
Food metagenome, Jonggazip commercial cabbage kimchi
1529
1604
+
Ile
GAT
[ENA]
¡û
>C11123733
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
865158
865233
+
Ile
GAT
[Ensembl]
¡û
>C11123764
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
1174589
1174664
+
Ile
GAT
[Ensembl]
¡û
>W121081998
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
37904
37979
+
Ile
GAT
[ENA]
¡û
>W121082031
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
245730
245805
+
Ile
GAT
[ENA]
¡û
>W1610528855
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
284644
284569
-
Ile
GAT
[ENA]
¡û
>W1610528868
JQBP01000018
Bacillota
Weissella kandleri [JQBP]
154
79
-
Ile
GAT
[ENA]
¡û
>W1710510995
FMYJ01000010
Bacillota
Leuconostocaceae bacterium R-53105 [FMYJ]
55485
55412
-
Ile
GAT
[ENA]
¡û
>W1710511011
FMYJ01000011
Bacillota
Leuconostocaceae bacterium R-53105 [FMYJ]
50742
50669
-
Ile
GAT
[ENA]
¡û
>W1710630445
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
284644
284569
-
Ile
GAT
[ENA]
¡û
>W1710630458
JQBP01000018
Bacillota
Weissella kandleri [JQBP]
154
79
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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