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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179821 (52 seq.)
>W1711117580
LUDG01000005
Bacteroidota
Riemerella anatipestifer [LUDG]
129222
129298
+
His
GTG
[ENA]
¡û
>W1711117614
LUDH01000003
Bacteroidota
Riemerella anatipestifer [LUDH]
128278
128354
+
His
GTG
[ENA]
¡û
>W1711117680
LUDJ01000004
Bacteroidota
Riemerella anatipestifer [LUDJ]
128290
128366
+
His
GTG
[ENA]
¡û
>W1711117722
LUDK01000003
Bacteroidota
Riemerella anatipestifer [LUDK]
128236
128312
+
His
GTG
[ENA]
¡û
>W1711117757
LUDL01000004
Bacteroidota
Riemerella anatipestifer [LUDL]
128290
128366
+
His
GTG
[ENA]
¡û
>W1711117806
LUDM01000006
Bacteroidota
Riemerella anatipestifer [LUDM]
84124
84048
-
His
GTG
[ENA]
¡û
>W1711117842
LUDN01000006
Bacteroidota
Riemerella anatipestifer [LUDN]
84122
84046
-
His
GTG
[ENA]
¡û
>W1711117876
LUDO01000003
Bacteroidota
Riemerella anatipestifer [LUDO]
128289
128365
+
His
GTG
[ENA]
¡û
>W1711117913
LUDP01000005
Bacteroidota
Riemerella anatipestifer [LUDP]
43880
43956
+
His
GTG
[ENA]
¡û
>W1711117948
LUDQ01000003
Bacteroidota
Riemerella anatipestifer [LUDQ]
128289
128365
+
His
GTG
[ENA]
¡û
>W1711118018
LUDS01000005
Bacteroidota
Riemerella anatipestifer [LUDS]
129222
129298
+
His
GTG
[ENA]
¡û
>W1711118051
LUDT01000037
Bacteroidota
Riemerella anatipestifer [LUDT]
24010
24086
+
His
GTG
[ENA]
¡û
>W1711118092
LUDU01000003
Bacteroidota
Riemerella anatipestifer [LUDU]
84099
84023
-
His
GTG
[ENA]
¡û
>W1711118130
LUDV01000004
Bacteroidota
Riemerella anatipestifer [LUDV]
128098
128174
+
His
GTG
[ENA]
¡û
>W131059220
ANGF01000028
Bacteroidota
Riemerella anatipestifer RA-SG [ANGF]
130969
130893
-
His
GTG
[ENA]
¡û
>WENV180007780
FLSB01000001
[FLSB] metagenome; saliva
136020
136094
+
His
GTG
[ENA]
¢þ
>WENV180758906
ODHY01000002
[ODHY] human metagenome; G_DNA_Buccal mucosa
135689
135763
+
His
GTG
[ENA]
¢þ
>WENV180794111
ODIY01006994
[ODIY] human metagenome; G_DNA_Buccal mucosa
106
32
-
His
GTG
[ENA]
¢þ
>WENV180864783
ODLI01000005
[ODLI] human metagenome; G_DNA_Buccal mucosa
43249
43323
+
His
GTG
[ENA]
¢þ
>WENV180880365
ODLZ01017493
[ODLZ] human metagenome; G_DNA_Tongue dorsum
210
136
-
His
GTG
[ENA]
¢þ
>WENV180936910
ODTV01001309
[ODTV] human metagenome; G_DNA_Buccal mucosa
2612
2538
-
His
GTG
[ENA]
¢þ
>WENV180947412
ODUF01002029
[ODUF] human metagenome; G_DNA_Supragingival plaque
1576
1502
-
His
GTG
[ENA]
¢þ
>C181226367
LT906475
Bacteroidota
Riemerella anatipestifer NCTC11014 [LT906475]
1027353
1027279
-
His
GTG
-
¡û
>C191065587
CP029760
Bacteroidota
Riemerella anatipestifer RCAD0133 [CP029760]
1755100
1755174
+
His
GTG
-
¡û
>W1911615648
PPEC01000004
Bacteroidota
Riemerella anatipestifer RA1 [PPEC]
128101
128175
+
His
GTG
[ENA]
¡û
>W1911788809
QYCZ01000001
Bacteroidota
Bergeyella cardium 1 [QYCZ]
236003
235929
-
His
GTG
[ENA]
¡û
>W1810191550
PKKR01000004
Bacteroidota
Riemerella anatipestifer 17CS0503 [PKKR]
125956
126030
+
His
GTG
[ENA]
¡û
>W1810583131
QEWX01000073
Bacteroidota
Riemerella anatipestifer RA2 [QEWX]
7215
7289
+
His
GTG
[ENA]
¡û
>C151018458
CP007204
Bacteroidota
Riemerella anatipestifer Yb2 [CP007204]
1562462
1562538
+
His
GTG
-
¡û
>C151025746
CP007503
Bacteroidota
Riemerella anatipestifer 17 [CP007503]
1013649
1013573
-
His
GTG
[Ensembl]
¡û
>C151025786
CP007504
Bacteroidota
Riemerella anatipestifer 153 [CP007504]
1025694
1025618
-
His
GTG
[Ensembl]
¡û
>C11118459
CP002346
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP002346]
1025814
1025738
-
His
GTG
[Ensembl]
¡û
>C11118482
CP002562
Bacteroidota
Riemerella anatipestifer RA-GD [CP002562]
1284397
1284473
+
His
GTG
[Ensembl]
¡û
>W11141048
AENH01000003
Bacteroidota
Riemerella anatipestifer RA-YM [AENH]
128035
128111
+
His
GTG
[ENA]
¡û
>W1511584123
LAVB01000009
Bacteroidota
Riemerella anatipestifer RA-JLLY [LAVB]
133146
133222
+
His
GTG
[ENA]
¡û
>C121012037
CP003388
Bacteroidota
Riemerella anatipestifer ATCC 11845 = DSM 15868 [CP003388]
1186537
1186461
-
His
GTG
-
¡û
>C131011608
CP004020
Bacteroidota
Riemerella anatipestifer RA-CH-2 [CP004020]
705094
705170
+
His
GTG
[Ensembl]
¡û
>W1610928939
LUDG01000005
Bacteroidota
Riemerella anatipestifer [LUDG]
129222
129298
+
His
GTG
[ENA]
¡û
>W1610928973
LUDH01000003
Bacteroidota
Riemerella anatipestifer [LUDH]
128278
128354
+
His
GTG
[ENA]
¡û
>W1610929039
LUDJ01000004
Bacteroidota
Riemerella anatipestifer [LUDJ]
128290
128366
+
His
GTG
[ENA]
¡û
>W1610929081
LUDK01000003
Bacteroidota
Riemerella anatipestifer [LUDK]
128236
128312
+
His
GTG
[ENA]
¡û
>W1610929116
LUDL01000004
Bacteroidota
Riemerella anatipestifer [LUDL]
128290
128366
+
His
GTG
[ENA]
¡û
>W1610929165
LUDM01000006
Bacteroidota
Riemerella anatipestifer [LUDM]
84124
84048
-
His
GTG
[ENA]
¡û
>W1610929201
LUDN01000006
Bacteroidota
Riemerella anatipestifer [LUDN]
84122
84046
-
His
GTG
[ENA]
¡û
>W1610929235
LUDO01000003
Bacteroidota
Riemerella anatipestifer [LUDO]
128289
128365
+
His
GTG
[ENA]
¡û
>W1610929272
LUDP01000005
Bacteroidota
Riemerella anatipestifer [LUDP]
43880
43956
+
His
GTG
[ENA]
¡û
>W1610929307
LUDQ01000003
Bacteroidota
Riemerella anatipestifer [LUDQ]
128289
128365
+
His
GTG
[ENA]
¡û
>W1610929377
LUDS01000005
Bacteroidota
Riemerella anatipestifer [LUDS]
129222
129298
+
His
GTG
[ENA]
¡û
>W1610929410
LUDT01000037
Bacteroidota
Riemerella anatipestifer [LUDT]
24010
24086
+
His
GTG
[ENA]
¡û
>W1610929451
LUDU01000003
Bacteroidota
Riemerella anatipestifer [LUDU]
84099
84023
-
His
GTG
[ENA]
¡û
>W1610929489
LUDV01000004
Bacteroidota
Riemerella anatipestifer [LUDV]
128098
128174
+
His
GTG
[ENA]
¡û
>W1710514171
FNAS01000017
Bacteroidota
Riemerella columbipharyngis [FNAS]
34163
34239
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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