This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179832 (32 seq.)
>W1710996751
LQBR01000003
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
75274
75350
+
Met
CAT
[ENA]
¡û
>W1711029540
LRFG01000003
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
75274
75350
+
Met
CAT
[ENA]
¡û
>W1711268647
LZDE01000335
Gammaproteobacteria
Microbulbifer mangrovi [LZDE]
42702
42626
-
Met
CAT
[ENA]
¡û
>w015718
AAPI01000004
Gammaproteobacteria
gamma proteobacterium HTCC2207 [AAPI]
103624
103551
-
Met
CAT
[ENA]
¡û
>C171030202
CP014143
Gammaproteobacteria
Microbulbifer aggregans CCB-MM1 [CP014143]
1459585
1459509
-
Met
CAT
-
¡û
>WENV180102898
OAOZ01045705
[OAOZ] marine metagenome; ENVO:00002010
273
349
+
Ile2
CAT
[ENA]
¡û
>WENV180368462
OBOF01098208
[OBOF] marine metagenome; ENVO:00002010
252
176
-
Ile2
CAT
[ENA]
¡û
>WENV180383257
OBOU01017048
[OBOU] marine metagenome; ENV:00002010
595
519
-
Ile2
CAT
[ENA]
¡û
>WENV180383766
OBOV01019045
[OBOV] marine metagenome; ENV:00002010
254
178
-
Ile2
CAT
[ENA]
¡û
>WENV180386375
OBPB01148684
[OBPB] marine metagenome; Sterile flask
289
213
-
Ile2
CAT
[ENA]
¡û
>WENV180590500
OCOT01041954
[OCOT] marine metagenome; ENVO:00002010
417
341
-
Ile2
CAT
[ENA]
¡û
>WENV180636796
OCRF01063829
[OCRF] marine metagenome; niskin bottle
176
252
+
Ile2
CAT
[ENA]
¡û
>W141203311
AZIN01000004
Gammaproteobacteria
Gammaproteobacteria bacterium MOLA455 [AZIN]
159453
159377
-
Met
CAT
[ENA]
¡û
>WENV182548623
OJBW01008621
[OJBW] seawater metagenome; Sea water
672
596
-
Ile2
CAT
[ENA]
¡û
>WENV170568804
FLMP01080727
[FLMP] seawater metagenome; seawater
426
502
+
Met
CAT
[ENA]
¡û
>WENV170821944
MDSY01031089
[MDSY] marine metagenome; seawater
8087
8011
-
Met
CAT
[ENA]
¡û
>C181204183
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
2653794
2653870
+
Met
CAT
-
¡û
>W1910462881
FWPT01000004
Gammaproteobacteria
Parendozoicomonas haliclonae [FWPT]
51164
51240
+
Met
CAT
[ENA]
¡û
>W2010409606
FWPT01000004
Gammaproteobacteria
Parendozoicomonas haliclonae [FWPT]
51164
51240
+
Ile2
CAT
[ENA]
¡û
>W2010702907
JACHHR010000005
Gammaproteobacteria
Microbulbifer hydrolyticus DSM 11525 [JACHHR]
77469
77545
+
Ile2
CAT
[ENA]
¡û
>W2011398764
RCIP01000005
Gammaproteobacteria
Saccharospirillum sp. LZ-5 [RCIP]
228504
228580
+
Ile2
CAT
[ENA]
¡û
>W2110293610
JACZCR010000050
Gammaproteobacteria
Microbulbifer hainanensis NBU-8HK146 [JACZCR]
51273
51349
+
Ile2
CAT
[ENA]
¡û
>W2110295200
JACZFR010000051
Gammaproteobacteria
Microbulbifer taiwanensis LMG 26125 [JACZFR]
48947
49023
+
Ile2
CAT
[ENA]
¡û
>C201202202
CP047491
Gammaproteobacteria
Microbulbifer hydrolyticus IRE-31 [CP047491]
3826645
3826721
+
Ile2
CAT
-
¡û
>C201250635
CP051666
Gammaproteobacteria
Marinobacterium sp. LSUCC0821 [CP051666]
1441591
1441515
-
Ile2
CAT
-
¡û
>C231266725
CP089928
Gammaproteobacteria
Microbulbifer sp. YPW16 [CP089928]
2973519
2973443
-
Ile2
CAT
-
¡û
>C241170974
CP055157
Gammaproteobacteria
Microbulbifer sp. YPW1 [CP055157]
2027435
2027359
-
Ile2
CAT
-
¡û
>W1610851408
LQBR01000003
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
75274
75350
+
Met
CAT
[ENA]
¡û
>W1610877808
LRFG01000003
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
75274
75350
+
Met
CAT
[ENA]
¡û
>W1610888457
LROY01000001
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
95880
95956
+
Met
CAT
[ENA]
¡û
>W1710520090
FNFH01000005
Gammaproteobacteria
Microbulbifer yueqingensis [FNFH]
81152
81228
+
Met
CAT
[ENA]
¡û
>W1710583714
FQVA01000003
Gammaproteobacteria
Microbulbifer donghaiensis [FQVA]
77557
77633
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK