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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179875 (97 seq.)
>W1710872210
LMLV01000001
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
2167943
2167867
-
Met
CAT
[ENA]
¡û
>W1710879665
LMRV01000030
Bacillota
Paenibacillus sp. Soil522 [LMRV]
110672
110596
-
Met
CAT
[ENA]
¡û
>W1711018448
LQWY01000015
Bacillota
Domibacillus aminovorans [LQWY]
30021
29946
-
Met
CAT
[ENA]
¡û
>W1711018512
LQWZ01000019
Bacillota
Domibacillus aminovorans [LQWZ]
30260
30185
-
Met
CAT
[ENA]
¡û
>W1711069235
LSFN01000004
Bacillota
Paenibacillus crassostreae LPB0068 [LSFN]
168797
168721
-
Met
CAT
[ENA]
¡û
>W131166526
ARCN01000015
Bacillota
Bacillus sp. 37MA [ARCN]
29999
29924
-
Met
CAT
[ENA]
¡û
>W1711146873
LVJF01000018
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
87089
87013
-
Met
CAT
[ENA]
¡û
>W1711146996
LVJG01000066
Bacillota
Paenibacillus macquariensis subsp. defensor [LVJG]
147
223
+
Met
CAT
[ENA]
¡û
>W1711147094
LVJH01000022
Bacillota
Paenibacillus glacialis [LVJH]
380
456
+
Met
CAT
[ENA]
¡û
>W1711147167
LVJI01000003
Bacillota
Paenibacillus antarcticus [LVJI]
71379
71303
-
Met
CAT
[ENA]
¡û
>W1711252433
LYPA01000024
Bacillota
Paenibacillus oryzae [LYPA]
244
320
+
Met
CAT
[ENA]
¡û
>W1711309514
MAQW01000029
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
536843
536767
-
Met
CAT
[ENA]
¡û
>W1711309580
MAQX01000006
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
69363
69287
-
Met
CAT
[ENA]
¡û
>W1711499583
MKQK01000125
Bacillota
Paenibacillus odorifer [MKQK]
361
285
-
Met
CAT
[ENA]
¡û
>W1711499652
MKQL01000069
Bacillota
Paenibacillus odorifer [MKQL]
122
198
+
Met
CAT
[ENA]
¡û
>W1711499675
MKQM01000044
Bacillota
Paenibacillus odorifer [MKQM]
118
194
+
Met
CAT
[ENA]
¡û
>W1711499721
MKQN01000003
Bacillota
Paenibacillus odorifer [MKQN]
161
85
-
Met
CAT
[ENA]
¡û
>W1711499788
MKQO01000003
Bacillota
Paenibacillus odorifer [MKQO]
117
193
+
Met
CAT
[ENA]
¡û
>W1711499855
MKQP01000006
Bacillota
Paenibacillus odorifer [MKQP]
165
89
-
Met
CAT
[ENA]
¡û
>W131234971
AULE01000029
Bacillota
Paenibacillus taiwanensis DSM 18679 [AULE]
561
637
+
Met
CAT
[ENA]
¡û
>W131235784
AULV01000018
Bacillota
Paenibacillus harenae DSM 16969 [AULV]
448
524
+
Met
CAT
[ENA]
¡û
>W1711632862
MPTC01000079
Bacillota
Paenibacillus odorifer [MPTC]
404
328
-
Met
CAT
[ENA]
¡û
>W1711632941
MPTD01000077
Bacillota
Paenibacillus odorifer [MPTD]
178
102
-
Met
CAT
[ENA]
¡û
>W1711633011
MPTE01000103
Bacillota
Paenibacillus odorifer [MPTE]
112
188
+
Met
CAT
[ENA]
¡û
>W1711633055
MPTF01000027
Bacillota
Paenibacillus odorifer [MPTF]
57148
57072
-
Met
CAT
[ENA]
¡û
>W1711633141
MPTG01000122
Bacillota
Paenibacillus odorifer [MPTG]
163
87
-
Met
CAT
[ENA]
¡û
>W1711633198
MPTH01000111
Bacillota
Paenibacillus odorifer [MPTH]
112
188
+
Met
CAT
[ENA]
¡û
>W1711633213
MPTI01000009
Bacillota
Paenibacillus odorifer [MPTI]
230114
230038
-
Met
CAT
[ENA]
¡û
>W1711633319
MPTJ01000074
Bacillota
Paenibacillus odorifer [MPTJ]
360
284
-
Met
CAT
[ENA]
¡û
>W1711633454
MPTL01000110
Bacillota
Paenibacillus odorifer [MPTL]
163
87
-
Met
CAT
[ENA]
¡û
>W1711633518
MPTM01000089
Bacillota
Paenibacillus odorifer [MPTM]
163
87
-
Met
CAT
[ENA]
¡û
>W1711633581
MPTN01000171
Bacillota
Paenibacillus odorifer [MPTN]
112
188
+
Met
CAT
[ENA]
¡û
>W1711633645
MPTO01000097
Bacillota
Paenibacillus odorifer [MPTO]
112
188
+
Met
CAT
[ENA]
¡û
>W1711633707
MPTP01000103
Bacillota
Paenibacillus odorifer [MPTP]
117
193
+
Met
CAT
[ENA]
¡û
>W1711633736
MPTQ01000033
Bacillota
Paenibacillus odorifer [MPTQ]
122
198
+
Met
CAT
[ENA]
¡û
>W1711633844
MPTR01000110
Bacillota
Paenibacillus odorifer [MPTR]
112
188
+
Met
CAT
[ENA]
¡û
>W1711633907
MPTS01000100
Bacillota
Paenibacillus odorifer [MPTS]
112
188
+
Met
CAT
[ENA]
¡û
>W1711633979
MPTT01000137
Bacillota
Paenibacillus odorifer [MPTT]
112
188
+
Met
CAT
[ENA]
¡û
>W1711634045
MPTU01000127
Bacillota
Paenibacillus odorifer [MPTU]
112
188
+
Met
CAT
[ENA]
¡û
>W1711634114
MPTV01000110
Bacillota
Paenibacillus odorifer [MPTV]
112
188
+
Met
CAT
[ENA]
¡û
>W1711636424
MPVM01000006
Bacillota
Paenibacillus odorifer [MPVM]
417641
417565
-
Met
CAT
[ENA]
¡û
>W1711636651
MPVO01000012
Bacillota
Paenibacillus odorifer [MPVO]
332
408
+
Met
CAT
[ENA]
¡û
>W1711680684
MRWQ01000013
Bacillota
Domibacillus mangrovi SAOS 44 [MRWQ]
30275
30200
-
Met
CAT
[ENA]
¡û
>W1711904551
MZNT01000023
Bacillota
Paenibacillus sp. 32352 [MZNT]
36542
36617
+
Met
CAT
[ENA]
¡û
>C171067574
CP017770
Bacillota
Paenibacillus crassostreae LPB0068 [CP017770]
2434829
2434753
-
Met
CAT
-
¡û
>W141072585
ASPV01000109
Bacillota
Paenibacillus sp. FSL H8-237 [ASPV]
244
320
+
Met
CAT
[ENA]
¡û
>W08007964
ABKS01000035
Bacillota
Paenibacillus sp. JDR-2 [ABKS]
121
197
+
Met
CAT
[ENA]
¡û
>W141233595
BAVZ01000010
Bacillota
Paenibacillus pini JCM 16418 [BAVZ]
183
258
+
Met
CAT
[ENA]
¡û
>WENV183734909
PJUA01000134
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
71533
71457
-
Met
CAT
[ENA]
¢þ
>WENV170700443
LIDZ01013972
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
191391
191315
-
Met
CAT
[ENA]
¢þ
>WENV170700607
LIDZ01015712
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
271
347
+
Met
CAT
[ENA]
¢þ
>C181021443
CP016808
Bacillota
Paenibacillus sp. BIHB 4019 [CP016808]
1826753
1826677
-
Met
CAT
-
¡û
>C181054798
CP021965
Bacillota
Paenibacillus odorifer CBA7130 [CP021965]
145398
145474
+
Met
CAT
-
¡û
>W141702818
JMLS01000033
Bacillota
Paenibacillus sp. UNC451MF [JMLS]
36121
36196
+
Met
CAT
[ENA]
¡û
>W141819586
JQMI01000018
Bacillota
Bacillus sp. 72 [JQMI]
325574
325499
-
Met
CAT
[ENA]
¡û
>W1910018466
BDQX01000125
Bacillota
Paenibacillus agaridevorans T-3040 [BDQX]
142
66
-
Met
CAT
[ENA]
¡û
>W1910154692
BILY01000053
Bacillota
Paenibacillus glycanilyticus NBRC 16618 [BILY]
37542
37466
-
Met
CAT
[ENA]
¡û
>W1910940473
NJAR01000002
Bacillota
Paenibacillus castaneae DSM 19417 [NJAR]
94591
94667
+
Met
CAT
[ENA]
¡û
>W1911069576
NMOK01000005
Bacillota
Paenibacillus sp. ATY16 [NMOK]
41687
41611
-
Met
CAT
[ENA]
¡û
>W1911153316
NPIA01000011
Bacillota
Lottiidibacillus patelloidae SA5d-4 [NPIA]
19816
19740
-
Met
CAT
[ENA]
¡û
>C09108166
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
163835
163911
+
Met
CAT
[Ensembl]
¡û
>W1911292101
NTQM01000092
Bacillota
Bacillus thuringiensis AFS025854 [NTQM]
195
119
-
Met
CAT
[ENA]
¡û
>W1911293891
NTRM01000057
Bacillota
Bacillus thuringiensis AFS023418 [NTRM]
76006
75930
-
Met
CAT
[ENA]
¡û
>W1911337551
NUPM01000090
Bacillota
Bacillus thuringiensis AFS030179 [NUPM]
195
119
-
Met
CAT
[ENA]
¡û
>W1911378535
NVMD01000024
Bacillota
Bacillus thuringiensis AFS094940 [NVMD]
76005
75929
-
Met
CAT
[ENA]
¡û
>W1911779741
QXQB01000002
Bacillota
Paenibacillus pinisoli JCM 19203 [QXQB]
1372077
1372001
-
Met
CAT
[ENA]
¡û
>W1911810937
QZCF01000015
Bacillota
Paenibacillus sp. 1011MAR3C5 [QZCF]
70189
70113
-
Met
CAT
[ENA]
¡û
>W1810161664
PJFA01000028
Bacillota
Paenibacillus sp. BGI2013 [PJFA]
11859
11783
-
Met
CAT
[ENA]
¡û
>W1810671925
QJTA01000031
Bacillota
Paenibacillus sp. OV191 [QJTA]
309
385
+
Met
CAT
[ENA]
¡û
>W1810759045
QPJD01000007
Bacillota
Paenibacillus prosopidis CECT 7506 [QPJD]
376269
376193
-
Met
CAT
[ENA]
¡û
>W1810870238
QUBQ01000003
Bacillota
Paenibacillus paeoniae M4BSY-1 [QUBQ]
376
452
+
Met
CAT
[ENA]
¡û
>C151047422
CP009279
Bacillota
Paenibacillus sp. FSL H7-0737 [CP009279]
154465
154541
+
Met
CAT
[Ensembl]
¡û
>C151047598
CP009281
Bacillota
Paenibacillus sp. FSL R5-0345 [CP009281]
147418
147494
+
Met
CAT
[Ensembl]
¡û
>C151050809
CP009428
Bacillota
Paenibacillus odorifer DSM 15391 [CP009428]
145796
145872
+
Met
CAT
[Ensembl]
¡û
>C151074756
CP010976
Bacillota
Paenibacillus sp. IHBB 10380 [CP010976]
5013470
5013546
+
Met
CAT
[Ensembl]
¡û
>W1511577208
LAQO01000042
Bacillota
Paenibacillus algorifonticola XJ259 [LAQO]
71272
71196
-
Met
CAT
[ENA]
¡û
>W1511698221
LGHP01000001
Bacillota
Bacillus sp. FJAT-28004 [LGHP]
3951331
3951407
+
Met
CAT
[ENA]
¡û
>W1610043454
BAZT01000010
Bacillota
Paenibacillus pini JCM 16418 [BAZT]
183
258
+
Met
CAT
[ENA]
¡û
>W1610734556
LMLV01000001
Bacillota
Paenibacillus sp. Leaf72 [LMLV]
2167943
2167867
-
Met
CAT
[ENA]
¡û
>W1610742011
LMRV01000030
Bacillota
Paenibacillus sp. Soil522 [LMRV]
110672
110596
-
Met
CAT
[ENA]
¡û
>W1610866924
LQWY01000015
Bacillota
Domibacillus aminovorans [LQWY]
30021
29946
-
Met
CAT
[ENA]
¡û
>W1610866988
LQWZ01000019
Bacillota
Domibacillus aminovorans [LQWZ]
30260
30185
-
Met
CAT
[ENA]
¡û
>W1610909763
LSFN01000004
Bacillota
Paenibacillus crassostreae LPB0068 [LSFN]
168797
168721
-
Met
CAT
[ENA]
¡û
>W1610957770
LVJF01000018
Bacillota
Paenibacillus macquariensis subsp. macquariensis [LVJF]
87089
87013
-
Met
CAT
[ENA]
¡û
>W1610957893
LVJG01000066
Bacillota
Paenibacillus macquariensis subsp. defensor [LVJG]
147
223
+
Met
CAT
[ENA]
¡û
>W1610957991
LVJH01000022
Bacillota
Paenibacillus glacialis [LVJH]
380
456
+
Met
CAT
[ENA]
¡û
>W1610958064
LVJI01000003
Bacillota
Paenibacillus antarcticus [LVJI]
71379
71303
-
Met
CAT
[ENA]
¡û
>W1611017221
LYPA01000024
Bacillota
Paenibacillus oryzae [LYPA]
244
320
+
Met
CAT
[ENA]
¡û
>W1611057171
MAQW01000029
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
536843
536767
-
Met
CAT
[ENA]
¡û
>W1611057237
MAQX01000006
Bacillota
Bacillus sp. FJAT-26390 [MAQX]
69363
69287
-
Met
CAT
[ENA]
¡û
>W1710040614
BAZT01000010
Bacillota
Paenibacillus pini JCM 16418 [BAZT]
183
258
+
Met
CAT
[ENA]
¡û
>W1710520583
FNFR01000013
Bacillota
Paenibacillus sp. OK060 [FNFR]
93777
93701
-
Met
CAT
[ENA]
¡û
>W1710531307
FNPL01000010
Bacillota
Thermoactinomyces sp. DSM 45892 [FNPL]
91814
91738
-
Met
CAT
[ENA]
¡û
>W1710560638
FONN01000028
Bacillota
Paenibacillus algorifonticola [FONN]
71560
71484
-
Met
CAT
[ENA]
¡û
>W1710581246
FPJZ01000006
Bacillota
Thermoactinomyces sp. DSM 45891 [FPJZ]
90188
90112
-
Met
CAT
[ENA]
¡û
>W1710597778
FTNK01000010
Bacillota
Paenibacillus macquariensis [FTNK]
449
525
+
Met
CAT
[ENA]
¡û
>W1710705101
LCZJ02000043
Bacillota
Paenibacillus etheri [LCZJ]
264
340
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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