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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179904 (102 seq.)
>W1710870847
LMKV01000023
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
128550
128626
+
Pro
CGG
[ENA]
¡û
>W1710872098
LMLS01000004
Alphaproteobacteria
Sphingomonas sp. Leaf231 [LMLS]
138026
138102
+
Pro
CGG
[ENA]
¡û
>W1710894098
LNFK01000031
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
26571
26647
+
Pro
CGG
[ENA]
¡û
>W1710927035
LOEX01000127
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
56591
56667
+
Pro
CGG
[ENA]
¡û
>W131003016
AGZU01000015
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
247174
247098
-
Pro
CGG
[ENA]
¡û
>W131098637
AORY01000012
Alphaproteobacteria
Sphingomonas sp. Mn802worker [AORY]
288454
288530
+
Pro
CGG
[ENA]
¡û
>WENV180020469
FTCZ01004413
[FTCZ] metagenome; soil
41363
41287
-
Pro
CGG
[ENA]
¡û
>WENV181222961
OFDC01000836
[OFDC] hot springs metagenome; Water
6941
7017
+
Pro
CGG
[ENA]
¡û
>WENV181226666
OFDN01000001
[OFDN] hot springs metagenome; Water
1035686
1035610
-
Pro
CGG
[ENA]
¡û
>W141191341
AYOY01000140
Alphaproteobacteria
Sphingobium sp. C100 [AYOY]
10307
10383
+
Pro
CGG
[ENA]
¡û
>WENV183528829
ONZX01009287
[ONZX] human gut metagenome; human gut
1674
1750
+
Pro
CGG
[ENA]
¡û
>WENV183726686
PJTO01000066
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
20477
20401
-
Pro
CGG
[ENA]
¡û
>WENV183727182
PJTO01010551
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
661
737
+
Pro
CGG
[ENA]
¡û
>WENV183729935
PJTR01000199
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
27399
27323
-
Pro
CGG
[ENA]
¡û
>WENV183745072
PJUL01001932
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3096
3172
+
Pro
CGG
[ENA]
¡û
>WENV170009902
APMI01004675
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
6667
6591
-
Pro
CGG
[ENA]
¡û
>WENV170011732
APMI01086418
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3440
3516
+
Pro
CGG
[ENA]
¡û
>WENV170018800
BBPD01001068
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2057
1981
-
Pro
CGG
[ENA]
¡û
>WENV170555458
CXWL01000652
[CXWL] groundwater metagenome; biofilm material
2432
2356
-
Pro
CGG
[ENA]
¡û
>WENV170651737
JRYG01001130
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
42452
42376
-
Pro
CGG
[ENA]
¡û
>WENV170711512
LNFM01005596
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12951
13027
+
Pro
CGG
[ENA]
¡û
>C191095119
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
1099718
1099794
+
Pro
CGG
-
¡û
>C191145673
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
317550
317474
-
Pro
CGG
-
¡û
>C191145724
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
317550
317474
-
Pro
CGG
-
¡û
>C191163694
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
3973805
3973881
+
Pro
CGG
-
¡û
>W141808024
JPPQ01000060
Alphaproteobacteria
Sphingobium sp. ba1 [JPPQ]
229
153
-
Pro
CGG
[ENA]
¡û
>W1910199127
FBVT01000011
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
101113
101037
-
Pro
CGG
[ENA]
¡û
>W1910199191
FBVU01000037
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
101007
100931
-
Pro
CGG
[ENA]
¡û
>W1910199232
FBVV01000018
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
147034
147110
+
Pro
CGG
[ENA]
¡û
>W1910199960
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
1308286
1308362
+
Pro
CGG
[ENA]
¡û
>W1910651494
LYMM01000022
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
119947
120023
+
Pro
CGG
[ENA]
¡û
>W1911737886
QTTB01000004
Alphaproteobacteria
Altererythrobacter troitsensis KMM 6042 [QTTB]
1054531
1054607
+
Pro
CGG
[ENA]
¡û
>W1810195673
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
674164
674240
+
Pro
CGG
[ENA]
¡û
>W1810789397
QRGP01000001
Alphaproteobacteria
Sphingorhabdus pulchriflava GY_G [QRGP]
1243546
1243622
+
Pro
CGG
[ENA]
¡û
>W2010075362
BBQY01000014
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
214392
214468
+
Pro
CGG
[ENA]
¡û
>W2010137854
BLJH01000012
Alphaproteobacteria
Novosphingobium sp. TCA1 [BLJH]
3093
3017
-
Pro
CGG
[ENA]
¡û
>W2010302872
CABVLH010000006
Alphaproteobacteria
Sphingomonas sp. EC-HK361 [CABVLH]
374460
374384
-
Pro
CGG
[ENA]
¡û
>W2010370481
CAHJWX010000180
Alphaproteobacteria
Sphingomonas bacterium [CAHJWX]
116
40
-
Pro
CGG
[ENA]
¡û
>W2010373491
FBVW01000002
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
293978
293902
-
Pro
CGG
[ENA]
¡û
>W2010438037
JAAAPO010000002
Alphaproteobacteria
Novosphingobium sp. FSY-8 [JAAAPO]
723643
723719
+
Pro
CGG
[ENA]
¡û
>W2010706398
JACHKE010000001
Alphaproteobacteria
Sphingobium sp. B9G5A [JACHKE]
2315601
2315525
-
Pro
CGG
[ENA]
¡û
>W2010731491
JACIJC010000001
Alphaproteobacteria
Sphingobium boeckii DSM 25079 [JACIJC]
311407
311331
-
Pro
CGG
[ENA]
¡û
>W2010731838
JACIJJ010000003
Alphaproteobacteria
Sphingomonas yantingensis DSM 27244 [JACIJJ]
351066
350990
-
Pro
CGG
[ENA]
¡û
>W2010796729
LYMM01000022
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
119947
120023
+
Pro
CGG
[ENA]
¡û
>W2011134925
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
455529
455453
-
Pro
CGG
[ENA]
¡û
>W2011260329
QJQX01000052
Alphaproteobacteria
Sphingobium lactosutens xwAA3 [QJQX]
272286
272362
+
Pro
CGG
[ENA]
¡û
>W2011269377
QLJC01000017
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env8_1116 [QLJC]
21813
21737
-
Pro
CGG
[ENA]
¡û
>W2011269512
QLJF01000013
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env2_1116 [QLJF]
80004
79928
-
Pro
CGG
[ENA]
¡û
>W2011269657
QLJI01000019
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt4_0816 [QLJI]
21764
21688
-
Pro
CGG
[ENA]
¡û
>W2011269697
QLJJ01000012
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt2_0716 [QLJJ]
80004
79928
-
Pro
CGG
[ENA]
¡û
>W2011269730
QLJK01000013
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
126717
126793
+
Pro
CGG
[ENA]
¡û
>W2011269768
QLJL01000002
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt1_0416 [QLJL]
300297
300221
-
Pro
CGG
[ENA]
¡û
>W2011286480
QQWJ01000021
Alphaproteobacteria
Sphingomonas koreensis KCTC 2883 [QQWJ]
48004
47928
-
Pro
CGG
[ENA]
¡û
>W2011286615
QQWM01000010
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env15_0417 [QQWM]
80004
79928
-
Pro
CGG
[ENA]
¡û
>W2011286795
QQWQ01000019
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env9_0217 [QQWQ]
21888
21812
-
Pro
CGG
[ENA]
¡û
>W2011286876
QQWS01000007
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt9_0208 [QQWS]
122482
122558
+
Pro
CGG
[ENA]
¡û
>W2011287271
QQXA01000017
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt14_0612 [QQXA]
21762
21686
-
Pro
CGG
[ENA]
¡û
>W2011287363
QQXC01000020
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt11_0411 [QQXC]
73006
73082
+
Pro
CGG
[ENA]
¡û
>W2011287402
QQXD01000020
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt12_0112 [QQXD]
21793
21717
-
Pro
CGG
[ENA]
¡û
>W2011287445
QQXE01000011
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env5_1116 [QQXE]
80004
79928
-
Pro
CGG
[ENA]
¡û
>W2011287928
QQXS01000012
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env54_1217 [QQXS]
80004
79928
-
Pro
CGG
[ENA]
¡û
>W2011287956
QQXT01000004
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env57_1217 [QQXT]
80004
79928
-
Pro
CGG
[ENA]
¡û
>W2011288384
QQYC01000013
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env45_1017 [QQYC]
80004
79928
-
Pro
CGG
[ENA]
¡û
>W2011288790
QQYL01000013
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env37_0717 [QQYL]
60685
60609
-
Pro
CGG
[ENA]
¡û
>W2011288832
QQYM01000012
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env35_0717 [QQYM]
72983
73059
+
Pro
CGG
[ENA]
¡û
>W2011288920
QQYO01000010
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env33_0717 [QQYO]
60685
60609
-
Pro
CGG
[ENA]
¡û
>W2011289059
QQYR01000008
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env30_0717 [QQYR]
60685
60609
-
Pro
CGG
[ENA]
¡û
>W2011490406
RSEL01000007
Alphaproteobacteria
Altererythrobacter rigui KCTC 42620 [RSEL]
125065
124989
-
Pro
CGG
[ENA]
¡û
>W2011553231
SDWJ01000001
Alphaproteobacteria
Sphingorhabdus profundilacus IMCC26285 [SDWJ]
746229
746153
-
Pro
CGG
[ENA]
¡û
>W2011556375
SEOO01000009
Alphaproteobacteria
Sphingobium cupriresistens CCTCC AB 2011146 [SEOO]
90859
90935
+
Pro
CGG
[ENA]
¡û
>W2011629430
SMBO01000001
Alphaproteobacteria
Novosphingobium sp. PhB57 [SMBO]
394549
394625
+
Pro
CGG
[ENA]
¡û
>W2011657996
SODQ01000006
Alphaproteobacteria
Novosphingobium sp. PhB55 [SODQ]
31111
31035
-
Pro
CGG
[ENA]
¡û
>W2012019604
VFNW01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-23394 [VFNW]
417942
417866
-
Pro
CGG
[ENA]
¡û
>W2012020172
VFOH01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12495 [VFOH]
1119193
1119269
+
Pro
CGG
[ENA]
¡û
>W2012046594
VIVF01000001
Alphaproteobacteria
Zymomonas mobilis DSM 12497 [VIVF]
240947
240871
-
Pro
CGG
[ENA]
¡û
>W2012047437
VIVT01000001
Alphaproteobacteria
Zymomonas mobilis NRRL B-14022 [VIVT]
266282
266206
-
Pro
CGG
[ENA]
¡û
>W2012047630
VIVX01000001
Alphaproteobacteria
Novosphingobium barchaimii 1192 [VIVX]
435471
435395
-
Pro
CGG
[ENA]
¡û
>W2012071348
VKKU01000001
Alphaproteobacteria
Sphingorhabdus contaminans KCTC32445 [VKKU]
797058
796982
-
Pro
CGG
[ENA]
¡û
>W2012208301
VYPZ01000004
Alphaproteobacteria
Sphingobium limneticum DSM 25076 [VYPZ]
205637
205561
-
Pro
CGG
[ENA]
¡û
>W2110195983
JABXWS010000031
Alphaproteobacteria
Novosphingobium sp. HR1a [JABXWS]
17262
17186
-
Pro
CGG
[ENA]
¡û
>C231441515
CP101740
Alphaproteobacteria
Sphingomonas qomolangmaensis S5-59 [CP101740]
191197
191121
-
Pro
CGG
-
¡û
>C231536473
CP110678
Alphaproteobacteria
Sphingomonas sp. S1-29 [CP110678]
3175918
3175842
-
Pro
CGG
-
¡û
>W2310021852
BSEF01000012
Alphaproteobacteria
Sphingobium sp. BS19 [BSEF]
60976
60900
-
Pro
CGG
[ENA]
¡û
>W1511352566
JROH01000015
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
46783
46859
+
Pro
CGG
[ENA]
¡û
>W1610076471
BCYT01000008
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
59928
59852
-
Pro
CGG
[ENA]
¡û
>W1610076670
BCYX01000028
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
52101
52025
-
Pro
CGG
[ENA]
¡û
>W1610592890
LDTC01000032
Alphaproteobacteria
Sphingomonas sanguinis [LDTC]
40228
40152
-
Pro
CGG
[ENA]
¡û
>W1610732095
LMJY01000020
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
115282
115206
-
Pro
CGG
[ENA]
¡û
>W1610732271
LMKC01000002
Alphaproteobacteria
Sphingomonas sp. Leaf9 [LMKC]
261481
261405
-
Pro
CGG
[ENA]
¡û
>W1610732380
LMKE01000027
Alphaproteobacteria
Sphingomonas sp. Leaf10 [LMKE]
45239
45163
-
Pro
CGG
[ENA]
¡û
>W1610732625
LMKJ01000010
Alphaproteobacteria
Sphingomonas sp. Leaf16 [LMKJ]
301001
300925
-
Pro
CGG
[ENA]
¡û
>W1610733346
LMKY01000009
Alphaproteobacteria
Sphingomonas sp. Leaf29 [LMKY]
512731
512655
-
Pro
CGG
[ENA]
¡û
>W1610735164
LMMH01000006
Alphaproteobacteria
Sphingomonas sp. Leaf257 [LMMH]
45281
45357
+
Pro
CGG
[ENA]
¡û
>W1610754364
LNFK01000031
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
26571
26647
+
Pro
CGG
[ENA]
¡û
>W1610784577
LOEX01000127
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
56591
56667
+
Pro
CGG
[ENA]
¡û
>W1610857778
LQQO01000056
Alphaproteobacteria
Sphingomonas hankookensis [LQQO]
109130
109206
+
Pro
CGG
[ENA]
¡û
>W1610909919
LSFP01000001
Alphaproteobacteria
Zymomonas mobilis [LSFP]
43699
43623
-
Pro
CGG
[ENA]
¡û
>W1610912154
LSIA01000111
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
8196
8272
+
Pro
CGG
[ENA]
¡û
>W1610912334
LSIE01000029
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
2733
2657
-
Pro
CGG
[ENA]
¡û
>W1610914895
LSKO01000209
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
40726
40650
-
Pro
CGG
[ENA]
¡û
>W1710074160
BCYT01000008
Alphaproteobacteria
Sphingobium abikonense NBRC 16140 [BCYT]
59928
59852
-
Pro
CGG
[ENA]
¡û
>W1710074359
BCYX01000028
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
52101
52025
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK