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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179909 (7 seq.)
>W141275408
JACX01000020
Alphaproteobacteria
Bartonella grahamii ATCC 700132 [JACX]
22240
22325
+
Leu
TAA
[ENA]
¡û
>C09102297
CP001562
Alphaproteobacteria
Bartonella grahamii as4aup [CP001562]
1507038
1507123
+
Leu
TAA
[Ensembl]
¡û
>W2011815601
UFTD01000001
Alphaproteobacteria
Bartonella grahamii NCTC12860 [UFTD]
242652
242737
+
Leu
TAA
[ENA]
¡û
>W2110077744
CACVBG010000005
Alphaproteobacteria
Bartonella grahamii A7JPB [CACVBG]
21178
21263
+
Leu
TAA
[ENA]
¡û
>W2110077848
CACVBJ010000005
Alphaproteobacteria
Bartonella grahamii A1JPB [CACVBJ]
21179
21264
+
Leu
TAA
[ENA]
¡û
>C241250908
CP123960
Alphaproteobacteria
Bartonella grahamii subsp. shimonis 01 [CP123960]
1992304
1992389
+
Leu
TAA
-
¡û
>C241250947
CP123961
Alphaproteobacteria
Bartonella grahamii subsp. shimonis 02 [CP123961]
1726567
1726652
+
Leu
TAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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