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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179950 (9 seq.)
>WENV180647788
OCSI01006131
[OCSI] metagenome; diffuse fluid
436
351
-
Ser
TGA
[ENA]
¡û
>WENV181314353
OFJJ01030227
[OFJJ] marine metagenome; seawater
287
202
-
Ser
TGA
[ENA]
¡û
>WENV181314407
OFJK01000589
[OFJK] marine metagenome; seawater
339
424
+
Ser
TGA
[ENA]
¡û
>WENV181314759
OFJL01000541
[OFJL] marine metagenome; seawater
2436
2351
-
Ser
TGA
[ENA]
¡û
>WENV181315279
OFJO01001159
[OFJO] marine metagenome; seawater
1059
974
-
Ser
TGA
[ENA]
¡û
>WENV181403009
OFTZ01009942
[OFTZ] marine metagenome; seawater
148
233
+
Ser
TGA
[ENA]
¡û
>WENV181403185
OFUA01001911
[OFUA] marine metagenome; seawater
590
675
+
Ser
TGA
[ENA]
¡û
>WENV170176204
CEOS01050690
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
119
204
+
Ser
TGA
[ENA]
¡û
>WENV170492259
CEVQ01129333
[CEVQ] marine metagenome genome assembly TARA_148b_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
464
549
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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