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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179969 (13 seq.)
>WENV180100081
OANK01021328
[OANK] marine metagenome; ENVO:00002010
373
458
+
Leu
TAG
[ENA]
¡û
>WENV180380220
OBOQ01012962
[OBOQ] marine metagenome; Fridge
615
700
+
Leu
TAG
[ENA]
¡û
>WENV180398633
OBQA01078285
[OBQA] marine metagenome; PVDF and polycarbonate filters
147
62
-
Leu
TAG
[ENA]
¡û
>WENV180585540
OCOL01021328
[OCOL] marine metagenome; ENVO:00002010
373
458
+
Leu
TAG
[ENA]
¡û
>WENV180586915
OCON01008072
[OCON] marine metagenome; seawater
814
899
+
Leu
TAG
[ENA]
¡û
>WENV180592564
OCOW01019135
[OCOW] marine metagenome; Sterivex cartridges
372
457
+
Leu
TAG
[ENA]
¡û
>WENV180688656
OCZA010204224
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
308
393
+
Leu
TAG
[ENA]
¡û
>WENV181122323
OEFM01000366
[OEFM] marine metagenome; ENVO:00000569 for seawater
107
22
-
Leu
TAG
[ENA]
¡û
>WENV183698633
OZSS01002515
[OZSS] metagenome; Seawater sample
4817
4732
-
Leu
TAG
[ENA]
¡û
>WENV170115213
CENG01003288
[CENG] marine metagenome genome assembly TARA_007_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
565
480
-
Leu
TAG
[ENA]
¡û
>WENV170127114
CENP01185824
[CENP] marine metagenome genome assembly TARA_030_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
749
834
+
Leu
TAG
[ENA]
¡û
>WENV170142087
CENX01366181
[CENX] marine metagenome genome assembly TARA_018_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
629
714
+
Leu
TAG
[ENA]
¡û
>WENV170146618
CENZ01067248
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
185
270
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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