This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179970 (6 seq.)
>WENV180688944
OCZA010389998
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
212
129
-
Tyr
GTA
[ENA]
¡û
>WENV181307366
OFIQ01000509
[OFIQ] marine metagenome; seawater
129
213
+
Tyr
GTA
[ENA]
¡û
>WENV183622519
OOFV01075738
[OOFV] marine metagenome; seawater
246
162
-
Tyr
GTA
[ENA]
¡û
>WENV170537847
CEWR01033440
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1406
1321
-
Tyr
GTA
[ENA]
¡û
>WENV170616724
FUWD012900645
[FUWD] metagenome; unknown
128
213
+
Tyr
GTA
[ENA]
¡û
>WENV170948704
MEHZ011263072
[MEHZ] marine metagenome; marine surface water
164
249
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK