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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180036 (39 seq.)
>W1711377905
MDZH01000195
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
30422
30506
+
Tyr
GTA
[ENA]
¡û
>W131063372
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
493668
493752
+
Tyr
GTA
[ENA]
¡û
>W131087165
AOCI01000063
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
10567
10651
+
Tyr
GTA
[ENA]
¡û
>W1711603015
MOLN01000013
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
18902
18986
+
Tyr
GTA
[ENA]
¡û
>W1711772028
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
1833646
1833730
+
Tyr
GTA
[ENA]
¡û
>C171016641
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
4096144
4096228
+
Tyr
GTA
-
¡û
>C171112082
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
2476153
2476069
-
Tyr
GTA
-
¡û
>WENV180110566
OAPN01000801
[OAPN] marine metagenome; 2011
2177
2261
+
Tyr
GTA
[ENA]
¢þ
>W141065588
AQPY01001245
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
2097
2181
+
Tyr
GTA
[ENA]
¡û
>W141242411
CAII01000397
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
12374
12290
-
Tyr
GTA
[ENA]
¡û
>W141242436
CAIJ01000049
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
3382
3298
-
Tyr
GTA
[ENA]
¡û
>W141242480
CAIK01000081
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
10699
10615
-
Tyr
GTA
[ENA]
¡û
>W141242578
CAIM01000529
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
11072
10988
-
Tyr
GTA
[ENA]
¡û
>W141242592
CAIN01000071
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
14463
14547
+
Tyr
GTA
[ENA]
¡û
>W141242638
CAIO01000216
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
7132
7216
+
Tyr
GTA
[ENA]
¡û
>W141242682
CAIP01000170
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
16973
17057
+
Tyr
GTA
[ENA]
¡û
>W141242705
CAIQ01000025
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
12708
12792
+
Tyr
GTA
[ENA]
¡û
>C08006350
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
3298366
3298450
+
Tyr
GTA
[Ensembl]
¡û
>WENV170680781
LFEF01022258
[LFEF] freshwater metagenome; waterbloom
58188
58272
+
Tyr
GTA
[ENA]
¢þ
>C181046192
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
378604
378520
-
Tyr
GTA
-
¡û
>C191007253
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
1207903
1207987
+
Tyr
GTA
-
¡û
>W1910020343
BDSG01000027
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
6972
7056
+
Tyr
GTA
[ENA]
¡û
>W1910020406
BDSM01000047
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
95306
95222
-
Tyr
GTA
[ENA]
¡û
>W1910038643
BEIU01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
592228
592312
+
Tyr
GTA
[ENA]
¡û
>W1910038692
BEIV01000021
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
21023
20939
-
Tyr
GTA
[ENA]
¡û
>W1910067350
BEYQ01000003
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
191958
191874
-
Tyr
GTA
[ENA]
¡û
>W1910067381
BFAC01000001
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
574616
574700
+
Tyr
GTA
[ENA]
¡û
>W1910142332
BIFY01000054
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
8916
9000
+
Tyr
GTA
[ENA]
¡û
>W1910665561
MCIH01000025
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
24766
24682
-
Tyr
GTA
[ENA]
¡û
>W1910768665
MOLZ01000018
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
29727
29811
+
Tyr
GTA
[ENA]
¡û
>C151079372
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
4096425
4096509
+
Tyr
GTA
[Ensembl]
¡û
>C151080699
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
4167328
4167412
+
Tyr
GTA
-
¡û
>W1510013615
BBPA01000014
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
34214
34298
+
Tyr
GTA
[ENA]
¡û
>W1610550822
JXYX01000004
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
289123
289039
-
Tyr
GTA
[ENA]
¡û
>W1710004739
AJHB01001073
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
872
956
+
Tyr
GTA
[ENA]
¡û
>W1710005088
AJUS01001136
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
871
955
+
Tyr
GTA
[ENA]
¡û
>W1710005125
AJUT01001070
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
860
944
+
Tyr
GTA
[ENA]
¡û
>W1710005161
AJUU01001055
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
859
943
+
Tyr
GTA
[ENA]
¡û
>W1710660699
JXYX01000004
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
289123
289039
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK