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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180080 (56 seq.)
>C173001485
CP019704
Bacteroidota
Polaribacter sp. BM10 [CP019704]
933276
933201
-
His
GTG
-
¡û
>w000852
AAOG01000003
Bacteroidota
Polaribacter irgensii 23-P [AAOG]
198430
198352
-
His
GTG
[ENA]
¡û
>WENV180587134
OCON01055767
[OCON] marine metagenome; seawater
102
178
+
His
GTG
[ENA]
¡û
>WENV183699809
OZSS01054295
[OZSS] metagenome; Seawater sample
961
885
-
His
GTG
[ENA]
¡û
>WENV170674545
LBBO01000080
[LBBO] hydrothermal vent metagenome; microbial mat from marine hydrothermal vent chimney in a deep-sea hydrothermal vent field
5330
5404
+
His
GTG
[ENA]
¡û
>WENV170786424
MDSV01003056
[MDSV] marine metagenome; seawater
4706
4782
+
His
GTG
[ENA]
¡û
>WENV170789494
MDSV01051116
[MDSV] marine metagenome; seawater
1317
1393
+
His
GTG
[ENA]
¡û
>WENV170792247
MDSV01096588
[MDSV] marine metagenome; seawater
10058
10134
+
His
GTG
[ENA]
¡û
>WENV170951176
MEHZ011540240
[MEHZ] marine metagenome; marine surface water
2121
2045
-
His
GTG
[ENA]
¡û
>W1930018680
MQUA01000013
Bacteroidota
Polaribacter filamentus ATCC 700397 [MQUA]
599475
599550
+
His
GTG
[ENA]
¡û
>W1930018967
MSCK01000001
Bacteroidota
Polaribacter butkevichii KCTC 12100 [MSCK]
954922
954997
+
His
GTG
[ENA]
¡û
>W1930018970
MSCM01000001
Bacteroidota
Polaribacter glomeratus ATCC 43844 [MSCM]
731063
731138
+
His
GTG
[ENA]
¡û
>W1930034203
OENB01000023
Bacteroidota
Tenacibaculum dicentrarchi TNO021 [OENB]
7102
7027
-
His
GTG
[ENA]
¡û
>W1930034204
OENC01000036
Bacteroidota
Tenacibaculum dicentrarchi type strain: TD3509 [OENC]
6961
6886
-
His
GTG
[ENA]
¡û
>W1930034206
OEND01000027
Bacteroidota
Tenacibaculum finnmarkense type strain: TFHFJ [OEND]
11948
12023
+
His
GTG
[ENA]
¡û
>W1930034208
OENF01000001
Bacteroidota
Tenacibaculum sp. TNO020 [OENF]
72689
72764
+
His
GTG
[ENA]
¡û
>W1830002768
PJBB01000003
Bacteroidota
Tenacibaculum sp. Bg11-29 [PJBB]
1987174
1987250
+
His
GTG
[ENA]
¡û
>W1830003399
PJMV01000001
Bacteroidota
Polaribacter sp. Hel1_33_96 [PJMV]
1118882
1118957
+
His
GTG
[ENA]
¡û
>ENV09001858
ACQI01017156
Hydrothermal vent metagenome LCHCB.C1
352
276
-
His
GTG
[ENA]
¡û
>W1530021795
JPDI01000001
Bacteroidota
Polaribacter sp. Hel1_33_49 [JPDI]
2203812
2203737
-
His
GTG
[ENA]
¡û
>W1530021797
JPDS01000001
Bacteroidota
Polaribacter sp. Hel1_85 [JPDS]
273473
273548
+
His
GTG
[ENA]
¡û
>W1530027911
LAQB01000019
Bacteroidota
Polaribacter sp. ASP10-06a [LAQB]
4459
4534
+
His
GTG
[ENA]
¡û
>C213001649
CP058983
Bacteroidota
Tenacibaculum sp. AHE14PA [CP058983]
1402247
1402172
-
His
GTG
-
¡û
>C213001651
CP058984
Bacteroidota
Polaribacter sp. R2A056_3_33 [CP058984]
3166828
3166903
+
His
GTG
-
¡û
>C213001652
CP058985
Bacteroidota
Polaribacter sp. AHE13PA [CP058985]
620564
620639
+
His
GTG
-
¡û
>C213001654
CP058986
Bacteroidota
Polaribacter sp. HaHaR_3_91 [CP058986]
1715670
1715745
+
His
GTG
-
¡û
>C213001921
CP060695
Bacteroidota
Polaribacter sp. L12M9 [CP060695]
1081997
1081922
-
His
GTG
-
¡û
>C213002139
CP061813
Bacteroidota
Polaribacter haliotis KCTC 52418 [CP061813]
888630
888555
-
His
GTG
-
¡û
>C213004331
CP071795
Bacteroidota
Polaribacter sp. G4M1 [CP071795]
602400
602325
-
His
GTG
-
¡û
>C213004353
CP071869
Bacteroidota
Polaribacter sp. SM13 [CP071869]
1020603
1020528
-
His
GTG
-
¡û
>C213005375
CP074436
Bacteroidota
Polaribacter sp. Q13 [CP074436]
1621281
1621206
-
His
GTG
-
¡û
>C213005864
CP079195
Bacteroidota
Polaribacter sp. NJDZ03 [CP079195]
1151572
1151497
-
His
GTG
-
¡û
>C213006347
CP082966
Bacteroidota
Polaribacter litorisediminis OITF-11 [CP082966]
1289784
1289859
+
His
GTG
-
¡û
>C233009397
CP115917
Bacteroidota
Tenacibaculum sp. 18-2881-A [CP115917]
2137696
2137621
-
His
GTG
-
¡û
>C233009399
CP115918
Bacteroidota
Tenacibaculum ovolyticum 20-4135-2 [CP115918]
3191842
3191767
-
His
GTG
-
¡û
>C233009458
CP116297
Bacteroidota
Tenacibaculum finnmarkense LI C6 FM3-F [CP116297]
624326
624401
+
His
GTG
-
¡û
>C233009463
CP116301
Bacteroidota
Tenacibaculum finnmarkense 17-2576-1 [CP116301]
630717
630792
+
His
GTG
-
¡û
>C233009469
CP116303
Bacteroidota
Tenacibaculum finnmarkense 20-4106-2 [CP116303]
625081
625156
+
His
GTG
-
¡û
>C233009393
CP115916
Bacteroidota
Tenacibaculum sp. 18-3228-7B [CP115916]
882892
882967
+
His
GTG
-
¡û
>C233007897
CP103460
Bacteroidota
Polaribacter undariae KCTC 42175 [CP103460]
1254349
1254274
-
His
GTG
-
¡û
>C243002635
CP047026
Bacteroidota
Polaribacter sp. L3A8 [CP047026]
4153110
4153185
+
His
GTG
-
¡û
>C243006427
CP128595
Bacteroidota
Polaribacter huanghezhanensis KCTC 32516 [CP128595]
1943887
1943962
+
His
GTG
-
¡û
>C163000844
CP013671
Bacteroidota
Tenacibaculum dicentrarchi AY7486TD [CP013671]
668560
668635
+
His
GTG
[Ensembl]
¡û
>W1630003598
BDCW01000034
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
2144
2069
-
His
GTG
[ENA]
¡û
>W1630011164
LIDG01000182
Bacteroidota
Cryomorphaceae bacterium BACL22 MAG-120619-bin32 [LIDG]
2788
2713
-
His
GTG
[ENA]
¡û
>W1630019471
LVWE01000059
Bacteroidota
Polaribacter atrinae [LVWE]
27522
27597
+
His
GTG
[ENA]
¡û
>W1630021322
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
1447428
1447504
+
His
GTG
[ENA]
¡û
>W1730002850
BDCW01000034
Bacteroidota
Tenacibaculum ovolyticum [BDCW]
2144
2069
-
His
GTG
[ENA]
¡û
>W1730013565
LIDG01000182
Bacteroidota
Cryomorphaceae bacterium BACL22 MAG-120619-bin32 [LIDG]
2788
2713
-
His
GTG
[ENA]
¡û
>W1730022712
LVWE01000059
Bacteroidota
Polaribacter atrinae [LVWE]
27522
27597
+
His
GTG
[ENA]
¡û
>W1730025294
MAKX01000001
Bacteroidota
Tenacibaculum soleae [MAKX]
1447428
1447504
+
His
GTG
[ENA]
¡û
>W1730041619
NIDK01000004
Bacteroidota
Polaribacter haliotis [NIDK]
11644
11719
+
His
GTG
[ENA]
¡û
>W1730041622
NIDL01000001
Bacteroidota
Polaribacter tangerinus WS2-14 [NIDL]
159440
159365
-
His
GTG
[ENA]
¡û
>W133003473
ARJD01000063
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
239002
239077
+
His
GTG
[ENA]
¡û
>W133003474
ARJD01000065
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
169674
169749
+
His
GTG
[ENA]
¡û
>W133004912
AUMF01000010
Bacteroidota
Tenacibaculum ovolyticum DSM 18103 [AUMF]
41886
41961
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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