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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180097 (26 seq.)
>WENV180520556
OCHE01138746
[OCHE] human gut metagenome; human gut
98
13
-
Leu
TAA
[ENA]
¡û
>WENV180540065
OCHP01300118
[OCHP] human gut metagenome; human gut
65
150
+
Leu
TAA
[ENA]
¡û
>WENV180753886
ODHT01062030
[ODHT] human metagenome; G_DNA_Stool
566
651
+
Leu
TAA
[ENA]
¡û
>WENV180894077
ODMR01032763
[ODMR] human metagenome; G_DNA_Stool
138
53
-
Leu
TAA
[ENA]
¡û
>WENV180962046
ODUN01004798
[ODUN] human metagenome; G_DNA_Stool
4187
4102
-
Leu
TAA
[ENA]
¡û
>WENV181024581
ODWX01116819
[ODWX] human metagenome; G_DNA_Stool
127
42
-
Leu
TAA
[ENA]
¡û
>WENV181356917
OFMU01002280
[OFMU] human gut metagenome; human gut
828
913
+
Leu
TAA
[ENA]
¡û
>WENV181832641
OGUP01046774
[OGUP] human gut metagenome; faeces
284
199
-
Leu
TAA
[ENA]
¡û
>WENV181912213
OGYD01023692
[OGYD] human gut metagenome; faeces
614
699
+
Leu
TAA
[ENA]
¡û
>WENV181944330
OGZA01001770
[OGZA] human gut metagenome; faeces
10515
10430
-
Leu
TAA
[ENA]
¡û
>WENV182135293
OHKI01039269
[OHKI] human gut metagenome; feces
421
506
+
Leu
TAA
[ENA]
¡û
>WENV182513069
OIWM01000037
[OIWM] human gut metagenome; faeces
54082
54167
+
Leu
TAA
[ENA]
¡û
>WENV182522101
OIWS01000052
[OIWS] human gut metagenome; faeces
110859
110944
+
Leu
TAA
[ENA]
¡û
>WENV182531616
OIXA01000091
[OIXA] human gut metagenome; faeces
91280
91365
+
Leu
TAA
[ENA]
¡û
>WENV182610289
OJJV01075886
[OJJV] metagenome; faeces
277
362
+
Leu
TAA
[ENA]
¡û
>WENV182631019
OJKW01003687
[OJKW] metagenome; faeces
5666
5751
+
Leu
TAA
[ENA]
¡û
>WENV182885969
OKSC01056390
[OKSC] human gut metagenome; faeces
706
791
+
Leu
TAA
[ENA]
¡û
>WENV183036247
OLGA01000384
[OLGA] human gut metagenome; faeces
2416
2501
+
Leu
TAA
[ENA]
¡û
>WENV183128658
OLNZ01014588
[OLNZ] human gut metagenome; faeces
1987
1902
-
Leu
TAA
[ENA]
¡û
>WENV183165948
OLOX01023974
[OLOX] human gut metagenome; faeces
2114
2029
-
Leu
TAA
[ENA]
¡û
>WENV183198853
OLPV01006027
[OLPV] human gut metagenome; faeces
2987
2902
-
Leu
TAA
[ENA]
¡û
>WENV183303248
OLSQ01000787
[OLSQ] human gut metagenome; faeces
3226
3311
+
Leu
TAA
[ENA]
¡û
>WENV183409971
OMAG01026264
[OMAG] human gut metagenome; feces
554
639
+
Leu
TAA
[ENA]
¡û
>WENV183458313
OMDM01006158
[OMDM] human gut metagenome; feces
2468
2383
-
Leu
TAA
[ENA]
¡û
>WENV183517877
OMNP01023306
[OMNP] human gut metagenome; feces
412
497
+
Leu
TAA
[ENA]
¡û
>WENV183659739
OQWM01049481
[OQWM] human gut metagenome; human gut
126
41
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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