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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180098 (44 seq.)
>W1711579170
MNRJ01000087
Bacillota
Clostridiales bacterium 59_14 [MNRJ]
41555
41640
+
Leu
TAA
[ENA]
¡û
>WENV180213934
OBAO01016015
[OBAO] human gut metagenome; human gut
886
971
+
Leu
TAA
[ENA]
¡û
>WENV180279229
OBHX01022655
[OBHX] metagenome; feces
246
161
-
Leu
TAA
[ENA]
¡û
>WENV180337333
OBLG01029670
[OBLG] human gut metagenome; human gut
1036
1121
+
Leu
TAA
[ENA]
¡û
>WENV180518148
OCHD01007885
[OCHD] human gut metagenome; human gut
125
40
-
Leu
TAA
[ENA]
¡û
>WENV180547288
OCIU01022801
[OCIU] human gut metagenome; human gut
1062
1147
+
Leu
TAA
[ENA]
¡û
>WENV180609251
OCPV01000635
[OCPV] human gut metagenome; human gut
24254
24339
+
Leu
TAA
[ENA]
¡û
>WENV180753937
ODHT01071991
[ODHT] human metagenome; G_DNA_Stool
454
539
+
Leu
TAA
[ENA]
¡û
>WENV180798924
ODJC01001114
[ODJC] human metagenome; G_DNA_Stool
4140
4225
+
Leu
TAA
[ENA]
¡û
>WENV180870868
ODLN01007468
[ODLN] human metagenome; G_DNA_Stool
3275
3190
-
Leu
TAA
[ENA]
¡û
>WENV181015360
ODWP01029432
[ODWP] human metagenome; G_DNA_Stool
88
3
-
Leu
TAA
[ENA]
¡û
>WENV181128143
OEFW01041545
[OEFW] human metagenome; G_DNA_Stool
609
694
+
Leu
TAA
[ENA]
¡û
>WENV181397966
OFSD01013793
[OFSD] human gut metagenome; human gut
155
70
-
Leu
TAA
[ENA]
¡û
>WENV181451836
OGDY01021191
[OGDY] metagenome; Human gut stool
444
529
+
Leu
TAA
[ENA]
¡û
>WENV181493868
OGGA01026489
[OGGA] metagenome; Human gut stool
415
500
+
Leu
TAA
[ENA]
¡û
>WENV181709638
OGPN01001986
[OGPN] human gut metagenome; faeces
11899
11814
-
Leu
TAA
[ENA]
¡û
>WENV181884810
OGXJ01002111
[OGXJ] human gut metagenome; faeces
10463
10548
+
Leu
TAA
[ENA]
¡û
>WENV181956153
OGZK01031745
[OGZK] human gut metagenome; faeces
768
853
+
Leu
TAA
[ENA]
¡û
>WENV181961386
OGZO01008238
[OGZO] human gut metagenome; faeces
4827
4912
+
Leu
TAA
[ENA]
¡û
>WENV181979467
OHAF01001270
[OHAF] human gut metagenome; faeces
19466
19381
-
Leu
TAA
[ENA]
¡û
>WENV182017513
OHBW01000260
[OHBW] human gut metagenome; feces
24859
24774
-
Leu
TAA
[ENA]
¡û
>WENV182337304
OHZV01019513
[OHZV] human gut metagenome; feces
399
484
+
Leu
TAA
[ENA]
¡û
>WENV182630242
OJKW01000157
[OJKW] metagenome; faeces
45534
45449
-
Leu
TAA
[ENA]
¡û
>WENV182634057
OJKY01004411
[OJKY] metagenome; faeces
2697
2782
+
Leu
TAA
[ENA]
¡û
>WENV182657261
OJMK01001285
[OJMK] human gut metagenome; feces
9180
9095
-
Leu
TAA
[ENA]
¡û
>WENV182657316
OJMK01001565
[OJMK] human gut metagenome; feces
10120
10035
-
Leu
TAA
[ENA]
¡û
>WENV182712727
OJPF01003250
[OJPF] human gut metagenome; stool sample
3750
3835
+
Leu
TAA
[ENA]
¡û
>WENV182714624
OJPH01002269
[OJPH] human gut metagenome; stool sample
2976
3061
+
Leu
TAA
[ENA]
¡û
>WENV182723124
OJPR01000238
[OJPR] human gut metagenome; stool sample
24158
24243
+
Leu
TAA
[ENA]
¡û
>WENV182728109
OJPW01001076
[OJPW] human gut metagenome; stool sample
10971
11056
+
Leu
TAA
[ENA]
¡û
>WENV182766580
OJRT01024864
[OJRT] human gut metagenome; stool sample
157
72
-
Leu
TAA
[ENA]
¡û
>WENV182868906
OKRS01048597
[OKRS] human gut metagenome; faeces
354
439
+
Leu
TAA
[ENA]
¡û
>WENV182880349
OKSA01000159
[OKSA] human gut metagenome; faeces
19475
19390
-
Leu
TAA
[ENA]
¡û
>WENV182914007
OKTO01013309
[OKTO] human gut metagenome; feces
89
4
-
Leu
TAA
[ENA]
¡û
>WENV182940392
OKVF01012659
[OKVF] human gut metagenome; human gut
387
472
+
Leu
TAA
[ENA]
¡û
>WENV182965169
OKWR01035089
[OKWR] human gut metagenome; human gut
374
459
+
Leu
TAA
[ENA]
¡û
>WENV183086387
OLJF01036323
[OLJF] metagenome; faeces
917
1002
+
Leu
TAA
[ENA]
¡û
>WENV183144322
OLOL01001485
[OLOL] human gut metagenome; faeces
3630
3715
+
Leu
TAA
[ENA]
¡û
>WENV183416407
OMAS01000768
[OMAS] human gut metagenome; feces
3822
3907
+
Leu
TAA
[ENA]
¡û
>WENV183432399
OMBR01003141
[OMBR] human gut metagenome; feces
4053
3968
-
Leu
TAA
[ENA]
¡û
>WENV183459652
OMDO01001727
[OMDO] human gut metagenome; feces
3323
3408
+
Leu
TAA
[ENA]
¡û
>WENV183471342
OMEM01007674
[OMEM] human gut metagenome; feces
366
281
-
Leu
TAA
[ENA]
¡û
>WENV183755775
PPYE01112687
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
119
34
-
Leu
TAA
[ENA]
¡û
>WENV170084475
CEAB01017206
[CEAB] gut metagenome; human stools
72652
72737
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK