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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180100 (15 seq.)
>WENV180732507
ODGY01000920
[ODGY] human metagenome; G_DNA_Supragingival plaque
8449
8366
-
Leu
TAA
[ENA]
¡û
>WENV180736213
ODHB01009993
[ODHB] human metagenome; G_DNA_Supragingival plaque
1200
1283
+
Leu
TAA
[ENA]
¡û
>WENV180754566
ODHU01000010
[ODHU] human metagenome; G_DNA_Supragingival plaque
72393
72476
+
Leu
TAA
[ENA]
¡û
>WENV180787032
ODIS01000999
[ODIS] human metagenome; G_DNA_Supragingival plaque
13367
13284
-
Leu
TAA
[ENA]
¡û
>WENV180801103
ODJD01007810
[ODJD] human metagenome; G_DNA_Supragingival plaque
872
789
-
Leu
TAA
[ENA]
¡û
>WENV180803682
ODJG01000020
[ODJG] human metagenome; G_DNA_Supragingival plaque
99951
99868
-
Leu
TAA
[ENA]
¡û
>WENV180812931
ODJO01000005
[ODJO] human metagenome; G_DNA_Supragingival plaque
298164
298247
+
Leu
TAA
[ENA]
¡û
>WENV180927715
ODTM01002812
[ODTM] human metagenome; G_DNA_Supragingival plaque
774
691
-
Leu
TAA
[ENA]
¡û
>WENV180979887
ODVC01008211
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
472
555
+
Leu
TAA
[ENA]
¡û
>WENV180980956
ODVE01004260
[ODVE] human metagenome; G_DNA_Supragingival plaque
1584
1667
+
Leu
TAA
[ENA]
¡û
>WENV181064609
ODYP01055162
[ODYP] human metagenome; G_DNA_Supragingival plaque
376
459
+
Leu
TAA
[ENA]
¡û
>WENV181090110
OEBC01000002
[OEBC] human metagenome; G_DNA_Supragingival plaque
68710
68627
-
Leu
TAA
[ENA]
¡û
>WENV181106808
OEEI01000230
[OEEI] human metagenome; G_DNA_Supragingival plaque
2183
2100
-
Leu
TAA
[ENA]
¡û
>WENV181143355
OEHM01000529
[OEHM] human metagenome; G_DNA_Supragingival plaque
5755
5838
+
Leu
TAA
[ENA]
¡û
>WENV181160189
OEIK01003031
[OEIK] human metagenome; G_DNA_Supragingival plaque
3037
3120
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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