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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180132 (10 seq.)
>WENV180700001
ODDM01047523
[ODDM] human metagenome; G_DNA_Stool
243
328
+
Leu
CAA
[ENA]
¡û
>WENV180740504
ODHE01031321
[ODHE] human metagenome; G_DNA_Stool
263
348
+
Leu
CAA
[ENA]
¡û
>WENV180766891
ODIF01002224
[ODIF] human metagenome; G_DNA_Stool
2678
2593
-
Leu
CAA
[ENA]
¡û
>WENV180936387
ODTU01005862
[ODTU] human metagenome; G_DNA_Stool
3450
3365
-
Leu
CAA
[ENA]
¡û
>WENV181447723
OGDU01031668
[OGDU] metagenome; Human gut stool
37
122
+
Leu
CAA
[ENA]
¡û
>WENV181522668
OGHF01003588
[OGHF] metagenome; Human gut stool
6978
6893
-
Leu
CAA
[ENA]
¡û
>WENV181564796
OGJH01032549
[OGJH] metagenome; Human gut stool
279
364
+
Leu
CAA
[ENA]
¡û
>WENV181628962
OGMO01035497
[OGMO] metagenome; Human gut stool
376
461
+
Leu
CAA
[ENA]
¡û
>WENV181959538
OGZM01032576
[OGZM] human gut metagenome; faeces
257
172
-
Leu
CAA
[ENA]
¡û
>WENV183025591
OLFT01027642
[OLFT] human gut metagenome; faeces
992
1077
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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