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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180140 (50 seq.)
>W1710856240
LLZH01000001
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
157835
157761
-
Met
CAT
[ENA]
¡û
>W1710934822
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
1743674
1743748
+
Met
CAT
[ENA]
¡û
>W1711044172
LRMV01000045
Actinomycetota
Micromonospora rifamycinica [LRMV]
6306
6382
+
Met
CAT
[ENA]
¡û
>W1711049532
LRQV01000063
Actinomycetota
Micromonospora rosaria [LRQV]
15633
15709
+
Met
CAT
[ENA]
¡û
>W1711184255
LWLS01000067
Actinomycetota
Micromonospora sp. CB01531 [LWLS]
58022
58098
+
Met
CAT
[ENA]
¡û
>W1711388688
MEIA01000176
Actinomycetota
Couchioplanes caeruleus subsp. caeruleus [MEIA]
1105
1181
+
Met
CAT
[ENA]
¡û
>W1711575798
MNJM01000277
Actinomycetota
Actinobacteria bacterium 13_1_20CM_3_71_11 [MNJM]
1940
1864
-
Met
CAT
[ENA]
¡û
>W1711937186
NAPR01000025
Actinomycetota
Micromonospora sp. NBS 11-29 NBS 11/29 [NAPR]
7075
7151
+
Met
CAT
[ENA]
¡û
>C171131282
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
1522404
1522478
+
Met
CAT
-
¡û
>WENV183750411
PPFU01298471
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1183
1109
-
Ile2
CAT
[ENA]
¢þ
>C181078566
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
1522427
1522501
+
Met
CAT
-
¡û
>C181162565
CP028158
Actinomycetota
Plantactinospora sp. BC1 [CP028158]
7108573
7108499
-
Met
CAT
-
¡û
>C181162641
CP028159
Actinomycetota
Plantactinospora sp. BB1 [CP028159]
7892220
7892146
-
Met
CAT
-
¡û
>C191007404
AP019371
Actinomycetota
Actinoplanes sp. OR16 [AP019371]
3588305
3588379
+
Met
CAT
-
¡û
>C191026477
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
1444570
1444646
+
Met
CAT
-
¡û
>W141758101
JNYJ01000043
Actinomycetota
Dactylosporangium aurantiacum [JNYJ]
100137
100061
-
Met
CAT
[ENA]
¡û
>W141758308
JNYN01000822
Actinomycetota
Actinoplanes liguriensis [JNYN]
2860
2784
-
Met
CAT
[ENA]
¡û
>W141758674
JNYT01002067
Actinomycetota
Ampullariella violaceochromogenes [JNYT]
3692
3616
-
Met
CAT
[ENA]
¡û
>W141760201
JNZX01000042
Actinomycetota
Dactylosporangium aurantiacum [JNZX]
11328
11404
+
Met
CAT
[ENA]
¡û
>C141004720
CP006272
Actinomycetota
Actinoplanes friuliensis DSM 7358 [CP006272]
1795406
1795482
+
Met
CAT
[Ensembl]
¡û
>W1910547358
FZNR01000025
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
119524
119600
+
Met
CAT
[ENA]
¡û
>W1910811011
MUYZ01000025
Actinomycetota
Micromonospora sp. MH33 [MUYZ]
8665
8740
+
Met
CAT
[ENA]
¡û
>W1910900978
NGNT01000001
Actinomycetota
Micromonospora echinospora ATCC 15837 [NGNT]
141735
141810
+
Met
CAT
[ENA]
¡û
>W1911492531
OBDY01000004
Actinomycetota
Actinoplanes atraurantiacus CGMCC 4.6857 [OBDY]
293075
293000
-
Met
CAT
[ENA]
¡û
>W1911675719
QGGF01000420
Actinomycetota
Micromonospora globispora S2901 [QGGF]
17827
17903
+
Met
CAT
[ENA]
¡û
>W1911676688
QHHV01000031
Actinomycetota
Actinoplanes sp. ATCC 53533 [QHHV]
40681
40755
+
Met
CAT
[ENA]
¡û
>W1810172774
PJMP01000001
Actinomycetota
Plantactinospora sp. CNZ320 [PJMP]
3173462
3173388
-
Met
CAT
[ENA]
¡û
>W1810368158
PVZG01000014
Actinomycetota
Pseudosporangium ferrugineum DSM 45348 [PVZG]
2983
2909
-
Met
CAT
[ENA]
¡û
>W1810603199
QGKS01000361
Actinomycetota
Micromonospora sp. 4G51 [QGKS]
55213
55289
+
Met
CAT
[ENA]
¡û
>W1810608037
QGSU01000511
Actinomycetota
Micromonospora globispora S2903 [QGSU]
19032
19108
+
Met
CAT
[ENA]
¡û
>W1810608097
QGSV01000221
Actinomycetota
Micromonospora globispora S2904 [QGSV]
20592
20668
+
Met
CAT
[ENA]
¡û
>W1810694905
QLMJ01000004
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
442155
442081
-
Met
CAT
[ENA]
¡û
>W1511355830
JRTT01000021
Actinomycetota
Actinoplanes utahensis NRRL 12052 [JRTT]
39435
39359
-
Met
CAT
[ENA]
¡û
>C11123555
CP002638
Actinomycetota
Micromonospora maris AB-18-032 [CP002638]
5223993
5223917
-
Met
CAT
[Ensembl]
¡û
>W1511545140
JZKF01000108
Actinomycetota
Actinoplanes rectilineatus NRRL B-16090 [JZKF]
6880
6954
+
Met
CAT
[ENA]
¡û
>C121007232
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
1522359
1522433
+
Met
CAT
[Ensembl]
¡û
>C161109621
LT594323
Actinomycetota
Micromonospora auratinigra DSM 44815 [LT594323]
3497646
3497570
-
Met
CAT
-
¡û
>C131015967
CP005929
Actinomycetota
Actinoplanes sp. N902-109 [CP005929]
1855213
1855289
+
Met
CAT
[Ensembl]
¡û
>W1610718621
LLZH01000001
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
157835
157761
-
Met
CAT
[ENA]
¡û
>W1610792310
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
1743674
1743748
+
Met
CAT
[ENA]
¡û
>W1610885417
LRMV01000045
Actinomycetota
Micromonospora rifamycinica [LRMV]
6306
6382
+
Met
CAT
[ENA]
¡û
>W1610890661
LRQV01000063
Actinomycetota
Micromonospora rosaria [LRQV]
15633
15709
+
Met
CAT
[ENA]
¡û
>W1710502841
FMCS01000011
Actinomycetota
Micromonospora chaiyaphumensis [FMCS]
168678
168602
-
Met
CAT
[ENA]
¡û
>W1710502908
FMCU01000001
Actinomycetota
Micromonospora matsumotoense [FMCU]
733911
733835
-
Met
CAT
[ENA]
¡û
>W1710503015
FMCW01000002
Actinomycetota
Micromonospora haikouensis [FMCW]
176923
176999
+
Met
CAT
[ENA]
¡û
>W1710503107
FMCX01000011
Actinomycetota
Micromonospora mirobrigensis [FMCX]
138565
138639
+
Met
CAT
[ENA]
¡û
>W1710504183
FMHU01000002
Actinomycetota
Micromonospora inyonensis [FMHU]
297544
297620
+
Met
CAT
[ENA]
¡û
>W1710504236
FMHV01000002
Actinomycetota
Micromonospora rhizosphaerae [FMHV]
6506902
6506826
-
Met
CAT
[ENA]
¡û
>W1710504531
FMIA01000002
Actinomycetota
Micromonospora yangpuensis [FMIA]
5003479
5003403
-
Met
CAT
[ENA]
¡û
>W1710504568
FMIB01000002
Actinomycetota
Micromonospora chersina [FMIB]
5812538
5812614
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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