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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180201 (107 seq.)
>W1711124763
LUKK01000037
Campylobacterota
Campylobacter hepaticus [LUKK]
50466
50542
+
Met
CAT
[ENA]
¡û
>WENV180275323
OBHT01006458
[OBHT] metagenome; hydrothermal vent
496
420
-
Met
CAT
[ENA]
¡û
>WENV180332615
OBLD01065055
[OBLD] metagenome; water
109
33
-
Met
CAT
[ENA]
¡û
>WENV180583385
OCNB01050790
[OCNB] metagenome; diffuse fluid
50
126
+
Met
CAT
[ENA]
¡û
>WENV180648312
OCSI01162103
[OCSI] metagenome; diffuse fluid
109
33
-
Met
CAT
[ENA]
¡û
>WENV180803502
ODJE01196377
[ODJE] human metagenome; G_DNA_Tongue dorsum
52
128
+
Met
CAT
[ENA]
¡û
>W141083604
AUPZ01000004
Campylobacterota
Sulfurimonas hongkongensis AST-10 [AUPZ]
71366
71290
-
Met
CAT
[ENA]
¡û
>WENV180861457
ODLE01004008
[ODLE] human metagenome; G_DNA_Tongue dorsum
2661
2737
+
Met
CAT
[ENA]
¡û
>WENV180897006
ODNI01004958
[ODNI] human metagenome; G_DNA_Tongue dorsum
3545
3621
+
Met
CAT
[ENA]
¡û
>WENV180960346
ODUM01024552
[ODUM] human metagenome; G_DNA_Tongue dorsum
52
128
+
Met
CAT
[ENA]
¡û
>WENV180979749
ODVC01001439
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
5101
5025
-
Met
CAT
[ENA]
¡û
>WENV181102533
OECT01004831
[OECT] human metagenome; G_DNA_Tongue dorsum
139
215
+
Met
CAT
[ENA]
¡û
>WENV181112849
OEEL01004179
[OEEL] human metagenome; G_DNA_Tongue dorsum
139
215
+
Met
CAT
[ENA]
¡û
>WENV181207926
OFBA01003712
[OFBA] metagenome; hydrothermal vent
609
533
-
Met
CAT
[ENA]
¡û
>WENV183515034
OMKS01043262
[OMKS] sediment metagenome; hot spring sediment
1319
1243
-
Met
CAT
[ENA]
¡û
>WENV183704020
PDWI01000001
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
165004
164928
-
Met
CAT
[ENA]
¡û
>WENV183704232
PDWI01000104
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
58882
58958
+
Met
CAT
[ENA]
¡û
>WENV183706162
PDWI01003317
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
641
565
-
Met
CAT
[ENA]
¡û
>WENV183707585
PDWI01009193
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1333
1409
+
Met
CAT
[ENA]
¡û
>WENV183708599
PDWI01017885
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1687
1611
-
Met
CAT
[ENA]
¡û
>WENV183709092
PDWI01023639
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4922
4998
+
Met
CAT
[ENA]
¡û
>WENV183711384
PDWI01068464
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
505
429
-
Met
CAT
[ENA]
¡û
>WENV183711415
PDWI01069192
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2687
2763
+
Met
CAT
[ENA]
¡û
>WENV183714773
PDWI01202956
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
351
275
-
Met
CAT
[ENA]
¡û
>WENV183715917
PDWI01273773
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
98
22
-
Met
CAT
[ENA]
¡û
>WENV183721031
PDWJ01052698
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1731
1807
+
Met
CAT
[ENA]
¡û
>WENV183722178
PDWJ01110529
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
948
872
-
Met
CAT
[ENA]
¡û
>WENV170575480
FPHB01000011
[FPHB] hydrothermal vent metagenome genome assembly, contig: NODE_29.; water
11789
11865
+
Met
CAT
[ENA]
¡û
>WENV170657766
JTFP01016815
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
820
744
-
Met
CAT
[ENA]
¡û
>WENV170664973
JYMV01021368
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
2989
3065
+
Met
CAT
[ENA]
¡û
>WENV170667955
JYMV01053402
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
2795
2719
-
Met
CAT
[ENA]
¡û
>W141451028
JFAP01000002
Campylobacterota
Campylobacter corcagiensis CIT045 [JFAP]
47132
47208
+
Met
CAT
[ENA]
¡û
>C191075355
CP031611
Campylobacterota
Campylobacter hepaticus HV10 [CP031611]
1238539
1238615
+
Met
CAT
-
¡û
>W141555961
JHQQ01000003
Campylobacterota
Campylobacter mucosalis [JHQQ]
18353
18277
-
Met
CAT
[ENA]
¡û
>W1910549773
FZPP01000003
Campylobacterota
Helicobacter marmotae [FZPP]
4255
4331
+
Met
CAT
[ENA]
¡û
>W1910915003
NHYM01000009
Campylobacterota
Helicobacter sp. 16-1353 [NHYM]
46674
46750
+
Met
CAT
[ENA]
¡û
>W1911740176
QURM01000007
Campylobacterota
Campylobacter hepaticus NSW44L [QURM]
51283
51359
+
Met
CAT
[ENA]
¡û
>W1911740228
QURS01000013
Campylobacterota
Campylobacter hepaticus SA34L [QURS]
21537
21461
-
Met
CAT
[ENA]
¡û
>W1911740257
QURT01000006
Campylobacterota
Campylobacter hepaticus SA32L [QURT]
50457
50533
+
Met
CAT
[ENA]
¡û
>W1911740301
QURU01000008
Campylobacterota
Campylobacter hepaticus HV16 [QURU]
51285
51361
+
Met
CAT
[ENA]
¡û
>W1911740386
QURW01000008
Campylobacterota
Campylobacter hepaticus 54L [QURW]
50889
50965
+
Met
CAT
[ENA]
¡û
>W1911740448
QURX01000023
Campylobacterota
Campylobacter hepaticus 84B [QURX]
21536
21460
-
Met
CAT
[ENA]
¡û
>W1911740467
QURY01000007
Campylobacterota
Campylobacter hepaticus AceM3a [QURY]
50453
50529
+
Met
CAT
[ENA]
¡û
>W1911740511
QURZ01000008
Campylobacterota
Campylobacter hepaticus ACE8659 [QURZ]
50453
50529
+
Met
CAT
[ENA]
¡û
>W1911740633
QUSC01000008
Campylobacterota
Campylobacter hepaticus 27L [QUSC]
50453
50529
+
Met
CAT
[ENA]
¡û
>W1911740678
QUSD01000008
Campylobacterota
Campylobacter hepaticus 19L [QUSD]
50889
50965
+
Met
CAT
[ENA]
¡û
>W1911766505
QXDV01000007
Campylobacterota
Campylobacter hepaticus SAJune18 [QXDV]
50407
50483
+
Met
CAT
[ENA]
¡û
>W1810046488
NXLO01000003
Campylobacterota
Helicobacter sp. MIT 99-5507 [NXLO]
23003
22927
-
Met
CAT
[ENA]
¡û
>W1810046505
NXLP01000003
Campylobacterota
Helicobacter sp. MIT 14-3879 [NXLP]
153462
153538
+
Met
CAT
[ENA]
¡û
>W1810046577
NXLR01000001
Campylobacterota
Helicobacter marmotae MIT 98-6070 [NXLR]
276493
276417
-
Met
CAT
[ENA]
¡û
>W1810056832
PDHH01000001
Campylobacterota
Campylobacter blaseri 17S00004-5 [PDHH]
138809
138885
+
Met
CAT
[ENA]
¡û
>W1810148599
PIRS01000009
Campylobacterota
Campylobacter concisus H20O-S1 [PIRS]
61133
61209
+
Met
CAT
[ENA]
¡û
>W1810229083
POYY01000156
Campylobacterota
Campylobacter concisus AAUH-9HCce [POYY]
259
183
-
Met
CAT
[ENA]
¡û
>W1810229144
POZA01000027
Campylobacterota
Campylobacter concisus AAUH-48UCil-a [POZA]
6866
6790
-
Met
CAT
[ENA]
¡û
>W1810229196
POZC01000018
Campylobacterota
Campylobacter concisus AAUH-47UCil [POZC]
12633
12557
-
Met
CAT
[ENA]
¡û
>W1810229467
POZJ01000052
Campylobacterota
Campylobacter concisus AAUH-47UCil-a [POZJ]
12570
12494
-
Met
CAT
[ENA]
¡û
>W1810231001
PPAW01000040
Campylobacterota
Campylobacter concisus AAUH-12CDrec-a [PPAW]
30853
30777
-
Met
CAT
[ENA]
¡û
>W2010296523
CABPVM010000003
Campylobacterota
Campylobacter concisus [CABPVM]
322575
322651
+
Met
CAT
[ENA]
¡û
>W2010296543
CABPVN010000003
Campylobacterota
Campylobacter concisus [CABPVN]
178753
178677
-
Met
CAT
[ENA]
¡û
>W2010431534
FZPP01000003
Campylobacterota
Helicobacter marmotae [FZPP]
4255
4331
+
Met
CAT
[ENA]
¡û
>W2010774671
LIWL01000016
Campylobacterota
Campylobacter mucosalis ATCC 49354 [LIWL]
15867
15791
-
Met
CAT
[ENA]
¡û
>W2010774770
LIWO01000005
Campylobacterota
Campylobacter mucosalis ATCC 43264 [LIWO]
23346
23270
-
Met
CAT
[ENA]
¡û
>W2010967863
NHYM01000009
Campylobacterota
Helicobacter sp. 16-1353 [NHYM]
46674
46750
+
Met
CAT
[ENA]
¡û
>W2011305465
QURM01000007
Campylobacterota
Campylobacter hepaticus NSW44L [QURM]
51283
51359
+
Met
CAT
[ENA]
¡û
>W2011305517
QURS01000013
Campylobacterota
Campylobacter hepaticus SA34L [QURS]
21537
21461
-
Met
CAT
[ENA]
¡û
>W2011305546
QURT01000006
Campylobacterota
Campylobacter hepaticus SA32L [QURT]
50457
50533
+
Met
CAT
[ENA]
¡û
>W2011305590
QURU01000008
Campylobacterota
Campylobacter hepaticus HV16 [QURU]
51285
51361
+
Met
CAT
[ENA]
¡û
>W2011305632
QURV01000007
Campylobacterota
Campylobacter hepaticus DisRed [QURV]
50453
50529
+
Met
CAT
[ENA]
¡û
>W2011305675
QURW01000008
Campylobacterota
Campylobacter hepaticus 54L [QURW]
50889
50965
+
Met
CAT
[ENA]
¡û
>W2011305737
QURX01000023
Campylobacterota
Campylobacter hepaticus 84B [QURX]
21536
21460
-
Met
CAT
[ENA]
¡û
>W2011305756
QURY01000007
Campylobacterota
Campylobacter hepaticus AceM3a [QURY]
50453
50529
+
Met
CAT
[ENA]
¡û
>W2011305800
QURZ01000008
Campylobacterota
Campylobacter hepaticus ACE8659 [QURZ]
50453
50529
+
Met
CAT
[ENA]
¡û
>W2011305840
QUSA01000007
Campylobacterota
Campylobacter hepaticus ACE1 [QUSA]
51285
51361
+
Met
CAT
[ENA]
¡û
>W2011305884
QUSB01000008
Campylobacterota
Campylobacter hepaticus 68B [QUSB]
51180
51256
+
Met
CAT
[ENA]
¡û
>W2011305922
QUSC01000008
Campylobacterota
Campylobacter hepaticus 27L [QUSC]
50453
50529
+
Met
CAT
[ENA]
¡û
>W2011305967
QUSD01000008
Campylobacterota
Campylobacter hepaticus 19L [QUSD]
50889
50965
+
Met
CAT
[ENA]
¡û
>W2011318737
QWGQ01000008
Campylobacterota
Campylobacter hepaticus VicJune18 [QWGQ]
51260
51336
+
Met
CAT
[ENA]
¡û
>W2011324869
QXDV01000007
Campylobacterota
Campylobacter hepaticus SAJune18 [QXDV]
50407
50483
+
Met
CAT
[ENA]
¡û
>W2012326983
WHMC01000008
Campylobacterota
Campylobacter hepaticus VIC_1/VIC [WHMC]
51260
51336
+
Met
CAT
[ENA]
¡û
>W2012327036
WHMD01000017
Campylobacterota
Campylobacter hepaticus VIC_2/VIC [WHMD]
21533
21457
-
Met
CAT
[ENA]
¡û
>W2012327108
WHMF01000008
Campylobacterota
Campylobacter hepaticus VIC_4/VIC [WHMF]
50453
50529
+
Met
CAT
[ENA]
¡û
>W2012327144
WHMG01000008
Campylobacterota
Campylobacter hepaticus VIC_5/VIC [WHMG]
50454
50530
+
Met
CAT
[ENA]
¡û
>W2012327175
WHMH01000003
Campylobacterota
Campylobacter hepaticus VIC_6/VIC [WHMH]
50364
50440
+
Met
CAT
[ENA]
¡û
>W2012327247
WHMI01000022
Campylobacterota
Campylobacter hepaticus QLD_1/QLD [WHMI]
21536
21460
-
Met
CAT
[ENA]
¡û
>W2012327266
WHMJ01000008
Campylobacterota
Campylobacter hepaticus QLD_2/QLD [WHMJ]
21548
21472
-
Met
CAT
[ENA]
¡û
>W2012327308
WHMK01000009
Campylobacterota
Campylobacter hepaticus QLD_3/QLD [WHMK]
51287
51363
+
Met
CAT
[ENA]
¡û
>W2012327349
WHML01000009
Campylobacterota
Campylobacter hepaticus QLD-4/QLD [WHML]
50408
50484
+
Met
CAT
[ENA]
¡û
>W2012327395
WHMM01000006
Campylobacterota
Campylobacter hepaticus QLD_5/QLD [WHMM]
21541
21465
-
Met
CAT
[ENA]
¡û
>W2012327436
WHMN01000009
Campylobacterota
Campylobacter hepaticus QLD_6/QLD [WHMN]
50453
50529
+
Met
CAT
[ENA]
¡û
>W2012327479
WHMO01000007
Campylobacterota
Campylobacter hepaticus WA_1/WA [WHMO]
50453
50529
+
Met
CAT
[ENA]
¡û
>W2012327539
WHMP01000015
Campylobacterota
Campylobacter hepaticus WA_2/WA [WHMP]
21591
21515
-
Met
CAT
[ENA]
¡û
>W2012327573
WHMQ01000007
Campylobacterota
Campylobacter hepaticus SA_1/SA [WHMQ]
50407
50483
+
Met
CAT
[ENA]
¡û
>W2012327604
WHMR01000008
Campylobacterota
Campylobacter hepaticus NSW_1/NSW [WHMR]
51285
51361
+
Met
CAT
[ENA]
¡û
>W2110111968
CAJHOE010000002
Campylobacterota
Campylobacter sp. LMG 8286 [CAJHOE]
188197
188273
+
Met
CAT
[ENA]
¡û
>C211025991
AP024713
Campylobacterota
Campylobacter sp. 19-13652 [AP024713]
266564
266488
-
Met
CAT
-
¡û
>C211170856
CP063078
Campylobacterota
Campylobacter corcagiensis 2016D-0077 [CP063078]
499824
499748
-
Met
CAT
-
¡û
>C211178886
CP063536
Campylobacterota
Campylobacter hepaticus USA52 [CP063536]
1494686
1494610
-
Met
CAT
-
¡û
>C211204835
CP065357
Campylobacterota
Campylobacter hepaticus UF2019SK1 [CP065357]
1238056
1238132
+
Met
CAT
-
¡û
>W1510014741
BBQE01000017
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
30063
29987
-
Met
CAT
[ENA]
¡û
>C241016629
CP012542
Campylobacterota
Campylobacter mucosalis CCUG 21559 [CP012542]
291484
291408
-
Met
CAT
-
¡û
>C241161389
CP053831
Campylobacterota
Campylobacter mucosalis ATCC 43264 [CP053831]
1527887
1527963
+
Met
CAT
-
¡û
>C241161794
CP053841
Campylobacterota
Campylobacter blaseri LMG 30333 [CP053841]
1851433
1851357
-
Met
CAT
-
¡û
>C241161821
CP053842
Campylobacterota
Campylobacter corcagiensis LMG 27932 [CP053842]
133740
133816
+
Met
CAT
-
¡û
>C241356608
CP140614
Campylobacterota
Sulfurospirillum sp. 1612 [CP140614]
1583734
1583658
-
Met
CAT
-
¡û
>W1511327950
JQIT01000004
Campylobacterota
Sulfuricurvum sp. PC08-66 [JQIT]
175023
175099
+
Met
CAT
[ENA]
¡û
>W1511350771
JRMQ01000001
Campylobacterota
Helicobacter japonicus MIT 01-6451 [JRMQ]
302319
302243
-
Met
CAT
[ENA]
¡û
>W1610935735
LUKK01000037
Campylobacterota
Campylobacter hepaticus [LUKK]
50466
50542
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK