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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180273 (66 seq.)
>W1710907014
LNOL01000039
Betaproteobacteria
Alcaligenes faecalis [LNOL]
100951
101035
+
Leu
TAG
[ENA]
¡û
>W1710995918
LQAS01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
634234
634150
-
Leu
TAG
[ENA]
¡û
>W131051773
AMXV01000025
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
47971
47887
-
Leu
TAG
[ENA]
¡û
>W131223046
AUBT01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
437474
437558
+
Leu
TAG
[ENA]
¡û
>W1711710490
MSZN01000004
Betaproteobacteria
Alcaligenes faecalis [MSZN]
44755
44839
+
Leu
TAG
[ENA]
¡û
>W1711710530
MSZO01000001
Betaproteobacteria
Alcaligenes faecalis [MSZO]
165545
165461
-
Leu
TAG
[ENA]
¡û
>W1711710583
MSZP01000001
Betaproteobacteria
Alcaligenes faecalis [MSZP]
1019574
1019658
+
Leu
TAG
[ENA]
¡û
>W1711710663
MSZQ01000010
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
122127
122043
-
Leu
TAG
[ENA]
¡û
>W1711710724
MSZR01000019
Betaproteobacteria
Alcaligenes faecalis [MSZR]
45385
45469
+
Leu
TAG
[ENA]
¡û
>W1711711866
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
1464658
1464742
+
Leu
TAG
[ENA]
¡û
>W1712110551
NJIH01000013
Betaproteobacteria
Candidimonas nitroreducens [NJIH]
27456
27372
-
Leu
TAG
[ENA]
¡û
>C171098227
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
584947
585031
+
Leu
TAG
-
¡û
>C171115529
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
1620296
1620212
-
Leu
TAG
-
¡û
>W141104401
AVOG02000001
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
868541
868625
+
Leu
TAG
[ENA]
¡û
>W141237705
BBJQ01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
176
92
-
Leu
TAG
[ENA]
¡û
>WENV183733417
PJTY01001817
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
3972
4056
+
Leu
TAG
[ENA]
¢þ
>WENV183739662
PJUE01053018
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
303
219
-
Leu
TAG
[ENA]
¢þ
>WENV183741191
PJUF01053178
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
159
75
-
Leu
TAG
[ENA]
¢þ
>WENV170130898
CENR01063100
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
618
702
+
Leu
TAG
[ENA]
¢þ
>WENV170136558
CENV01047958
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3988
4072
+
Leu
TAG
[ENA]
¢þ
>WENV170155649
CEOG01083469
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
493
409
-
Leu
TAG
[ENA]
¢þ
>WENV170201077
CEPP01070070
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
86
2
-
Leu
TAG
[ENA]
¢þ
>WENV170645907
JQGF01000310
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
1793
1709
-
Leu
TAG
[ENA]
¢þ
>WENV170655220
JTFN01012286
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1692
1776
+
Leu
TAG
[ENA]
¢þ
>WENV170655238
JTFN01013767
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
701
617
-
Leu
TAG
[ENA]
¢þ
>WENV170655318
JTFN01020484
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
68
152
+
Leu
TAG
[ENA]
¢þ
>WENV170656446
JTFO01016716
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
50
134
+
Leu
TAG
[ENA]
¢þ
>WENV170656468
JTFO01018088
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1527
1443
-
Leu
TAG
[ENA]
¢þ
>WENV170658256
JTFP01076471
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
558
642
+
Leu
TAG
[ENA]
¢þ
>WENV170705502
LNAO01001148
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3199
3115
-
Leu
TAG
[ENA]
¢þ
>WENV170705660
LNAP01000084
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
33647
33731
+
Leu
TAG
[ENA]
¢þ
>WENV170706215
LNAP01001711
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1206
1290
+
Leu
TAG
[ENA]
¢þ
>WENV170706258
LNAP01001801
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13269
13353
+
Leu
TAG
[ENA]
¢þ
>WENV170706629
LNAP01004871
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
6389
6305
-
Leu
TAG
[ENA]
¢þ
>WENV170706987
LNAP01010420
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7199
7115
-
Leu
TAG
[ENA]
¢þ
>WENV170707613
LNAP01027325
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
15
99
+
Leu
TAG
[ENA]
¢þ
>WENV170707831
LNAP01035763
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2360
2276
-
Leu
TAG
[ENA]
¢þ
>WENV170708220
LNAP01060132
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1205
1289
+
Leu
TAG
[ENA]
¢þ
>WENV170965932
MTEV01010427
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
2799
2883
+
Leu
TAG
[ENA]
¢þ
>C181053248
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
1648297
1648213
-
Leu
TAG
-
¡û
>C181088606
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
1358555
1358471
-
Leu
TAG
-
¡û
>C191023151
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
812846
812762
-
Leu
TAG
-
¡û
>C191085285
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1962908
1962824
-
Leu
TAG
-
¡û
>C191091186
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
197695
197611
-
Leu
TAG
-
¡û
>C191113962
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
2633221
2633137
-
Leu
TAG
-
¡û
>C191149644
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
3384944
3385028
+
Leu
TAG
-
¡û
>W1910927825
NIQA01000008
Betaproteobacteria
Pusillimonas sp. T2 [NIQA]
390
306
-
Leu
TAG
[ENA]
¡û
>W1911178556
NQMK01000002
Betaproteobacteria
Pusillimonas sp. NJUB218 [NQMK]
517842
517926
+
Leu
TAG
[ENA]
¡û
>W1911180894
NQOU01000001
Betaproteobacteria
Neopusillimonas maritima 17-4A [NQOU]
81171
81087
-
Leu
TAG
[ENA]
¡û
>W1911192799
NQYH01000013
Betaproteobacteria
Neopusillimonas maritima L52-1-41 [NQYH]
60687
60603
-
Leu
TAG
[ENA]
¡û
>W1810062095
PDNV01000007
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
103193
103277
+
Leu
TAG
[ENA]
¡û
>W1810062148
PDNW01000020
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
53800
53716
-
Leu
TAG
[ENA]
¡û
>W1810583910
QEXO01000004
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
407594
407510
-
Leu
TAG
[ENA]
¡û
>W1810720993
QNRQ01000003
Betaproteobacteria
Eoetvoesiella caeni DSM 25520 [QNRQ]
213220
213136
-
Leu
TAG
[ENA]
¡û
>W1810759283
QPJH01000004
Betaproteobacteria
Pusillimonas sp. EA3 [QPJH]
147052
147136
+
Leu
TAG
[ENA]
¡û
>W1511321003
JQCV01000001
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
324903
324987
+
Leu
TAG
[ENA]
¡û
>C11118217
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
819890
819806
-
Leu
TAG
[Ensembl]
¡û
>W1511537487
JZBR01000009
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
471128
471212
+
Leu
TAG
[ENA]
¡û
>C161051363
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
3740937
3740853
-
Leu
TAG
[Ensembl]
¡û
>W1610093555
CYTB01000002
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
248
164
-
Leu
TAG
[ENA]
¡û
>W121091202
AKMR01000005
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
148243
148159
-
Leu
TAG
[ENA]
¡û
>W1610766028
LNOL01000039
Betaproteobacteria
Alcaligenes faecalis [LNOL]
100951
101035
+
Leu
TAG
[ENA]
¡û
>W1610850575
LQAS01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
634234
634150
-
Leu
TAG
[ENA]
¡û
>W1610921543
LSUO01000028
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
7629
7713
+
Leu
TAG
[ENA]
¡û
>W1710082506
BDHG01000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
955767
955851
+
Leu
TAG
[ENA]
¡û
>W1710586412
FQXE01000009
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
101382
101466
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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