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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180277 (72 seq.)
>W1710863520
LMFE01000010
Actinomycetota
Nocardia sp. Root136 [LMFE]
478931
479013
+
Leu
TAG
[ENA]
¡û
>W1711050384
LRRM01000003
Actinomycetota
Nocardia brasiliensis [LRRM]
278175
278091
-
Leu
TAG
[ENA]
¡û
>C171072558
CP018082
Actinomycetota
Nocardia mangyaensis Y48 [CP018082]
1361550
1361468
-
Leu
TAG
-
¡û
>WENV180031868
FTJU01000174
[FTJU] metagenome; soil
14436
14518
+
Leu
TAG
[ENA]
¢þ
>W141168717
AXVD01000020
Actinomycetota
Nocardia sp. CNY236 [AXVD]
52197
52281
+
Leu
TAG
[ENA]
¡û
>W141231438
BAUA01000170
Actinomycetota
Nocardia brasiliensis IFM 10847 [BAUA]
5668
5752
+
Leu
TAG
[ENA]
¡û
>C181057468
CP022088
Actinomycetota
Nocardia brasiliensis FDAARGOS_352 [CP022088]
4782906
4782990
+
Leu
TAG
-
¡û
>C191065484
CP029710
Actinomycetota
Nocardia sp. CS682 [CP029710]
6367063
6366981
-
Leu
TAG
-
¡û
>C191208388
LR134352
Actinomycetota
Nocardia asteroides NCTC11293 [LR134352]
2253603
2253521
-
Leu
TAG
-
¡û
>W141769086
JOFP01000004
Actinomycetota
Pilimelia anulata [JOFP]
90658
90576
-
Leu
TAG
[ENA]
¡û
>W1911493025
OBEG01000003
Actinomycetota
Nocardia amikacinitolerans DSM 45537 [OBEG]
199528
199446
-
Leu
TAG
[ENA]
¡û
>W1911532670
OIFR01000007
Actinomycetota
Nocardia suismassiliense S-137 [OIFR]
210893
210811
-
Leu
TAG
[ENA]
¡û
>W1911814620
QZFU01000010
Actinomycetota
Nocardia panacis YIM PH 21724 [QZFU]
18921
19003
+
Leu
TAG
[ENA]
¡û
>W1810173148
PJMW01000002
Actinomycetota
Nocardia fluminea DSM 44489 [PJMW]
307339
307421
+
Leu
TAG
[ENA]
¡û
>W1810532505
QCYJ01000020
Actinomycetota
Nocardia aurea SYSU K10002 [QCYJ]
531041
531123
+
Leu
TAG
[ENA]
¡û
>W1810659656
QJKF01000011
Actinomycetota
Nocardia tenerifensis DSM 44704 [QJKF]
3105
3024
-
Leu
TAG
[ENA]
¡û
>W1511221559
JNFP01000001
Actinomycetota
Nocardia vulneris W9851 [JNFP]
317420
317336
-
Leu
TAG
[ENA]
¡û
>W121055518
AIHV01000004
Actinomycetota
Nocardia brasiliensis ATCC 700358 [AIHV]
309709
309625
-
Leu
TAG
[ENA]
¡û
>W121124840
BAFO01000012
Actinomycetota
Nocardia asteroides NBRC 15531 [BAFO]
90826
90744
-
Leu
TAG
[ENA]
¡û
>W121124909
BAFP01000256
Actinomycetota
Nocardia abscessus NBRC 100374 [BAFP]
22218
22134
-
Leu
TAG
[ENA]
¡û
>W121124979
BAFR01000048
Actinomycetota
Nocardia araoensis NBRC 100135 [BAFR]
51503
51421
-
Leu
TAG
[ENA]
¡û
>W121125027
BAFS01000069
Actinomycetota
Nocardia asiatica NBRC 100129 [BAFS]
8587
8505
-
Leu
TAG
[ENA]
¡û
>W121125106
BAFT01000128
Actinomycetota
Nocardia brasiliensis NBRC 14402 [BAFT]
207570
207486
-
Leu
TAG
[ENA]
¡û
>W121125383
BAFZ01000034
Actinomycetota
Nocardia exalbida NBRC 100660 [BAFZ]
39738
39656
-
Leu
TAG
[ENA]
¡û
>W121125702
BAGF01000023
Actinomycetota
Nocardia pneumoniae NBRC 100136 [BAGF]
133051
132969
-
Leu
TAG
[ENA]
¡û
>W121125753
BAGG01000031
Actinomycetota
Nocardia takedensis NBRC 100417 [BAGG]
54470
54388
-
Leu
TAG
[ENA]
¡û
>W121125799
BAGH01000097
Actinomycetota
Nocardia tenerifensis NBRC 101015 [BAGH]
3023
2942
-
Leu
TAG
[ENA]
¡û
>W121126114
BAGN01000067
Actinomycetota
Nocardia vinacea NBRC 16497 [BAGN]
18983
18899
-
Leu
TAG
[ENA]
¡û
>W1610078308
BDAU01000032
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
48936
49018
+
Leu
TAG
[ENA]
¡û
>W1610078489
BDAX01000028
Actinomycetota
Nocardia alba NBRC 108234 [BDAX]
31068
31150
+
Leu
TAG
[ENA]
¡û
>W1610078494
BDAY01000003
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
140101
140017
-
Leu
TAG
[ENA]
¡û
>W1610078596
BDAZ01000073
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
30848
30930
+
Leu
TAG
[ENA]
¡û
>W1610078600
BDBA01000004
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
128552
128468
-
Leu
TAG
[ENA]
¡û
>W1610078673
BDBB01000021
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
6307
6389
+
Leu
TAG
[ENA]
¡û
>W1610078723
BDBC01000020
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
191104
191186
+
Leu
TAG
[ENA]
¡û
>W1610078788
BDBD01000024
Actinomycetota
Nocardia coubleae NBRC 108252 [BDBD]
29105
29187
+
Leu
TAG
[ENA]
¡û
>W1610078828
BDBE01000033
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
122952
123034
+
Leu
TAG
[ENA]
¡û
>W1610078902
BDBG01000003
Actinomycetota
Nocardia salmonicida NBRC 100378 [BDBG]
441357
441439
+
Leu
TAG
[ENA]
¡û
>W1610079254
BDBM01000046
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
10215
10134
-
Leu
TAG
[ENA]
¡û
>W1610079387
BDBP01000044
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
5732
5814
+
Leu
TAG
[ENA]
¡û
>W1610079483
BDBR01000012
Actinomycetota
Nocardia salmonicida NBRC 13393 [BDBR]
86065
85983
-
Leu
TAG
[ENA]
¡û
>W1610079887
BDBY01000439
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
4411
4330
-
Leu
TAG
[ENA]
¡û
>W1610080026
BDCB01000034
Actinomycetota
Nocardia salmonicida NBRC 100376 [BDCB]
127013
126931
-
Leu
TAG
[ENA]
¡û
>W1610080269
BDCF01000076
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
6287
6369
+
Leu
TAG
[ENA]
¡û
>W1610080387
BDCI01000004
Actinomycetota
Nocardia vulneris [BDCI]
336785
336869
+
Leu
TAG
[ENA]
¡û
>W1610080517
BDCK01000028
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
73698
73782
+
Leu
TAG
[ENA]
¡û
>W1610080872
BDCT01000064
Actinomycetota
Nocardia arizonensis [BDCT]
14423
14341
-
Leu
TAG
[ENA]
¡û
>C131008871
CP003876
Actinomycetota
Nocardia brasiliensis ATCC 700358 HUJEG-1 [CP003876]
1763194
1763110
-
Leu
TAG
[Ensembl]
¡û
>W1610617936
LGYZ01000080
Actinomycetota
Nocardia arizonensis [LGYZ]
14570
14488
-
Leu
TAG
[ENA]
¡û
>W1610725866
LMFE01000010
Actinomycetota
Nocardia sp. Root136 [LMFE]
478931
479013
+
Leu
TAG
[ENA]
¡û
>W1610891513
LRRM01000003
Actinomycetota
Nocardia brasiliensis [LRRM]
278175
278091
-
Leu
TAG
[ENA]
¡û
>W1710076867
BDAU01000032
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
48936
49018
+
Leu
TAG
[ENA]
¡û
>W1710077048
BDAX01000028
Actinomycetota
Nocardia alba NBRC 108234 [BDAX]
31068
31150
+
Leu
TAG
[ENA]
¡û
>W1710077053
BDAY01000003
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
140101
140017
-
Leu
TAG
[ENA]
¡û
>W1710077155
BDAZ01000073
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
30848
30930
+
Leu
TAG
[ENA]
¡û
>W1710077159
BDBA01000004
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
128552
128468
-
Leu
TAG
[ENA]
¡û
>W1710077232
BDBB01000021
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
6307
6389
+
Leu
TAG
[ENA]
¡û
>W1710077282
BDBC01000020
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
191104
191186
+
Leu
TAG
[ENA]
¡û
>W1710077347
BDBD01000024
Actinomycetota
Nocardia coubleae NBRC 108252 [BDBD]
29105
29187
+
Leu
TAG
[ENA]
¡û
>W1710077387
BDBE01000033
Actinomycetota
Nocardia caishijiensis NBRC 108228 [BDBE]
122952
123034
+
Leu
TAG
[ENA]
¡û
>W1710077461
BDBG01000003
Actinomycetota
Nocardia salmonicida NBRC 100378 [BDBG]
441357
441439
+
Leu
TAG
[ENA]
¡û
>W1710077813
BDBM01000046
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
10215
10134
-
Leu
TAG
[ENA]
¡û
>W1710077946
BDBP01000044
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
5732
5814
+
Leu
TAG
[ENA]
¡û
>W1710078042
BDBR01000012
Actinomycetota
Nocardia salmonicida NBRC 13393 [BDBR]
86065
85983
-
Leu
TAG
[ENA]
¡û
>W1710078446
BDBY01000439
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
4411
4330
-
Leu
TAG
[ENA]
¡û
>W1710078585
BDCB01000034
Actinomycetota
Nocardia salmonicida NBRC 100376 [BDCB]
127013
126931
-
Leu
TAG
[ENA]
¡û
>W1710078828
BDCF01000076
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
6287
6369
+
Leu
TAG
[ENA]
¡û
>W1710078946
BDCI01000004
Actinomycetota
Nocardia vulneris [BDCI]
336785
336869
+
Leu
TAG
[ENA]
¡û
>W1710079076
BDCK01000028
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
73698
73782
+
Leu
TAG
[ENA]
¡û
>W1710079431
BDCT01000064
Actinomycetota
Nocardia arizonensis [BDCT]
14423
14341
-
Leu
TAG
[ENA]
¡û
>W1710568879
FOTX01000004
Actinomycetota
Nocardia asteroides [FOTX]
35783
35701
-
Leu
TAG
[ENA]
¡û
>W1710744111
LGYZ01000080
Actinomycetota
Nocardia arizonensis [LGYZ]
14570
14488
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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