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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180313 (13 seq.)
>WENV180007453
FLSA01027874
[FLSA] metagenome; saliva
172
87
-
Leu
TAA
[ENA]
¡û
>WENV180751055
ODHS01018826
[ODHS] human metagenome; G_DNA_Supragingival plaque
862
777
-
Leu
TAA
[ENA]
¡û
>WENV180787683
ODIS01011458
[ODIS] human metagenome; G_DNA_Supragingival plaque
2138
2053
-
Leu
TAA
[ENA]
¡û
>WENV180796206
ODJB01001977
[ODJB] human metagenome; G_DNA_Supragingival plaque
9313
9398
+
Leu
TAA
[ENA]
¡û
>WENV180951545
ODUH01031305
[ODUH] human metagenome; G_DNA_Subgingival plaque
222
137
-
Leu
TAA
[ENA]
¡û
>WENV180976669
ODUY01192836
[ODUY] human metagenome; G_DNA_Supragingival plaque
235
150
-
Leu
TAA
[ENA]
¡û
>WENV180980646
ODVE01000902
[ODVE] human metagenome; G_DNA_Supragingival plaque
134
219
+
Leu
TAA
[ENA]
¡û
>WENV180987438
ODVK01024032
[ODVK] human metagenome; G_DNA_Supragingival plaque
113
198
+
Leu
TAA
[ENA]
¡û
>WENV181049645
ODYD01001043
[ODYD] human metagenome; G_DNA_Supragingival plaque
5782
5867
+
Leu
TAA
[ENA]
¡û
>WENV181068128
ODZI01131099
[ODZI] human metagenome; G_DNA_Supragingival plaque
114
199
+
Leu
TAA
[ENA]
¡û
>WENV181079115
OEAS01002147
[OEAS] human metagenome; G_DNA_Supragingival plaque
2911
2826
-
Leu
TAA
[ENA]
¡û
>WENV183509970
OMHL01000098
[OMHL] human oral metagenome; human oral
1267
1352
+
Leu
TAA
[ENA]
¡û
>C211305997
CP072328
Unclassified
TM7 phylum sp. oral taxon 349 PM007 [CP072328]
355355
355440
+
Leu
TAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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