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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180345 (4 seq.)
>WENV180979126
ODVC01000018
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
190775
190860
+
Leu
CAA
[ENA]
¡û
>WENV181007135
ODWD01001598
[ODWD] human metagenome; G_DNA_Buccal mucosa
359
444
+
Leu
CAA
[ENA]
¡û
>W1911629253
PRLK01000003
Unclassified
Candidatus Saccharibacteria bacterium TM7_CMJM_G6_1_HOT_870 [PRLK]
25811
25896
+
Leu
CAA
[ENA]
¡û
>W2011219504
PRLK01000003
Unclassified
Candidatus Saccharibacteria bacterium TM7_CMJM_G6_1_HOT_870 [PRLK]
25811
25896
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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