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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180399 (117 seq.)
>W1710860246
LMCS01000003
Actinomycetota
Microbacterium sp. Root322 [LMCS]
590296
590380
+
Tyr
GTA
[ENA]
¡û
>W1710860356
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
553758
553674
-
Tyr
GTA
[ENA]
¡û
>W1710861337
LMDN01000004
Actinomycetota
Leifsonia sp. Root4 [LMDN]
103051
102967
-
Tyr
GTA
[ENA]
¡û
>W1710862344
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
553306
553390
+
Tyr
GTA
[ENA]
¡û
>W1710863980
LMFN01000003
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
547548
547632
+
Tyr
GTA
[ENA]
¡û
>W1710864332
LMFU01000001
Actinomycetota
Agromyces sp. Root1464 [LMFU]
643515
643431
-
Tyr
GTA
[ENA]
¡û
>W1710864541
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
216083
215999
-
Tyr
GTA
[ENA]
¡û
>W1710865147
LMGL01000001
Actinomycetota
Microbacterium sp. Root166 [LMGL]
217440
217356
-
Tyr
GTA
[ENA]
¡û
>W1710865470
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
553275
553359
+
Tyr
GTA
[ENA]
¡û
>W1710865589
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
1598871
1598789
-
Tyr
GTA
[ENA]
¡û
>W1710866761
LMHS01000003
Actinomycetota
Microbacterium sp. Root180 [LMHS]
558171
558087
-
Tyr
GTA
[ENA]
¡û
>W1710867763
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
361445
361527
+
Tyr
GTA
[ENA]
¡û
>W1710867935
LMIR01000002
Actinomycetota
Agromyces sp. Root81 [LMIR]
1922792
1922876
+
Tyr
GTA
[ENA]
¡û
>W1710868833
LMJK01000001
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
1076291
1076375
+
Tyr
GTA
[ENA]
¡û
>W1710870579
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
622310
622394
+
Tyr
GTA
[ENA]
¡û
>W1710873326
LMMR01000007
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
244912
244996
+
Tyr
GTA
[ENA]
¡û
>W1710875495
LMOK01000003
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
608481
608397
-
Tyr
GTA
[ENA]
¡û
>W1710876008
LMOW01000001
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
2109512
2109596
+
Tyr
GTA
[ENA]
¡û
>W1710893844
LNFD01000330
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
1007
1091
+
Tyr
GTA
[ENA]
¡û
>W131098967
AOSO01000005
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
163861
163945
+
Tyr
GTA
[ENA]
¡û
>W131216929
ATWH01000004
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
305916
305831
-
Tyr
GTA
[ENA]
¡û
>W131217917
ATXF01000006
Actinomycetota
Agromyces italicus DSM 16388 [ATXF]
167569
167485
-
Tyr
GTA
[ENA]
¡û
>W131217939
ATXG01000001
Actinomycetota
Agromyces subbeticus DSM 16689 [ATXG]
292995
293080
+
Tyr
GTA
[ENA]
¡û
>W131226599
AUEM01000003
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
276225
276309
+
Tyr
GTA
[ENA]
¡û
>W1711385562
MEEI01000032
Actinomycetota
Microbacterium sp. SCN 70-18 [MEEI]
11513
11597
+
Tyr
GTA
[ENA]
¡û
>W1711724763
MTQL01000007
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
12208
12124
-
Tyr
GTA
[ENA]
¡û
>C171073905
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
828108
828192
+
Tyr
GTA
-
¡û
>WENV180096931
MTBK01156182
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1632
1714
+
Tyr
GTA
[ENA]
¢þ
>WENV180693060
OCZS010972703
[OCZS] soil metagenome; soil
193
111
-
Tyr
GTA
[ENA]
¢þ
>WENV181385413
OFRI01083615
[OFRI] wastewater metagenome; Exp Tend VB 90WW
460
544
+
Tyr
GTA
[ENA]
¢þ
>W141188392
AYMR01000005
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
70203
70287
+
Tyr
GTA
[ENA]
¡û
>W141243132
CAJF01000005
Actinomycetota
Microbacterium yannicii PS01 [CAJF]
76849
76765
-
Tyr
GTA
[ENA]
¡û
>W141289504
JARE01000053
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
10137
10053
-
Tyr
GTA
[ENA]
¡û
>W141289531
JARF01000016
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
31868
31952
+
Tyr
GTA
[ENA]
¡û
>WENV183728237
PJTQ01000004
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
107620
107537
-
Tyr
GTA
[ENA]
¢þ
>WENV183737237
PJUD01001606
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
5310
5393
+
Tyr
GTA
[ENA]
¢þ
>WENV183740458
PJUF01002353
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
6438
6355
-
Tyr
GTA
[ENA]
¢þ
>C181143919
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
382912
382994
+
Tyr
GTA
-
¡û
>C181169615
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
349922
350006
+
Tyr
GTA
-
¡û
>C181200418
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
883022
883106
+
Tyr
GTA
-
¡û
>C191074593
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
976285
976369
+
Tyr
GTA
-
¡û
>C191143854
CP035491
Actinomycetota
Agromyces protaetiae FW100M-8 [CP035491]
385464
385380
-
Tyr
GTA
-
¡û
>C191158812
CP038266
Actinomycetota
Microbacterium wangchenii dk512 [CP038266]
3006085
3006001
-
Tyr
GTA
-
¡û
>C191183362
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
32717
32633
-
Tyr
GTA
-
¡û
>C191185958
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
852577
852661
+
Tyr
GTA
-
¡û
>W1910183357
BJNQ01000013
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
1569
1485
-
Tyr
GTA
[ENA]
¡û
>W1910211983
FMIR01000018
Actinomycetota
Microbacterium oxydans [FMIR]
277404
277320
-
Tyr
GTA
[ENA]
¡û
>W1910373866
FUHU01000021
Actinomycetota
Agrococcus casei LMG 22410 [FUHU]
7836
7920
+
Tyr
GTA
[ENA]
¡û
>W1910784628
MPZN01000044
Actinomycetota
Microterricola pindariensis PON 10 [MPZN]
18573
18491
-
Tyr
GTA
[ENA]
¡û
>W1911566450
PCOV01000002
Actinomycetota
Microbacterium sp. MYb66 [PCOV]
207144
207060
-
Tyr
GTA
[ENA]
¡û
>W1911566619
PCOY01000024
Actinomycetota
Microbacterium sp. MYb62 [PCOY]
52496
52580
+
Tyr
GTA
[ENA]
¡û
>W1911566704
PCPA01000006
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
118029
118113
+
Tyr
GTA
[ENA]
¡û
>W1911566841
PCPD01000005
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
118024
118108
+
Tyr
GTA
[ENA]
¡û
>W1911567022
PCPG01000019
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
67456
67372
-
Tyr
GTA
[ENA]
¡û
>W1911567124
PCPI01000013
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
69242
69158
-
Tyr
GTA
[ENA]
¡û
>W1911567154
PCPJ01000002
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
46803
46887
+
Tyr
GTA
[ENA]
¡û
>W1911567249
PCPL01000005
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
118032
118116
+
Tyr
GTA
[ENA]
¡û
>W1911567521
PCPQ01000005
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
99677
99593
-
Tyr
GTA
[ENA]
¡û
>W1810277210
PSTQ01000011
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
78338
78422
+
Tyr
GTA
[ENA]
¡û
>W1810277385
PSTU01000016
Actinomycetota
Pseudoclavibacter sp. Z016 [PSTU]
169
87
-
Tyr
GTA
[ENA]
¡û
>W1810277530
PSTX01000019
Actinomycetota
Pseudoclavibacter sp. RFBJ5 [PSTX]
423248
423332
+
Tyr
GTA
[ENA]
¡û
>W1810277540
PSTY01000009
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
287384
287468
+
Tyr
GTA
[ENA]
¡û
>W1810277591
PSTZ01000003
Actinomycetota
Pseudoclavibacter sp. RFBB5 [PSTZ]
232463
232545
+
Tyr
GTA
[ENA]
¡û
>W1810277674
PSUA01000015
Actinomycetota
Pseudoclavibacter sp. RFBA6 [PSUA]
488082
488166
+
Tyr
GTA
[ENA]
¡û
>W1810282054
PSXX01000016
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
93500
93582
+
Tyr
GTA
[ENA]
¡û
>W1810282140
PSXZ01000015
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
423224
423308
+
Tyr
GTA
[ENA]
¡û
>W1810282195
PSYA01000013
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
296817
296899
+
Tyr
GTA
[ENA]
¡û
>W1810282249
PSYB01000019
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
287152
287236
+
Tyr
GTA
[ENA]
¡û
>W1810282255
PSYC01000007
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
101022
101104
+
Tyr
GTA
[ENA]
¡û
>W1810392941
PYAU01000001
Actinomycetota
Labedella gwakjiensis DSM 21548 [PYAU]
681943
681861
-
Tyr
GTA
[ENA]
¡û
>W1810476277
QANL01000001
Actinomycetota
Planctomonas deserti 13S1-3 [QANL]
1190394
1190477
+
Tyr
GTA
[ENA]
¡û
>W1810569007
QEFA01000003
Actinomycetota
Agromyces badenianii 845 [QEFA]
370047
369963
-
Tyr
GTA
[ENA]
¡û
>W1810569061
QEFB01000018
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
90748
90666
-
Tyr
GTA
[ENA]
¡û
>W1810577910
QEOP01000001
Actinomycetota
Amnibacterium flavum M8JJ-5 [QEOP]
786670
786752
+
Tyr
GTA
[ENA]
¡û
>W1810886042
QUNT01000002
Actinomycetota
Agromyces sp. OV568 [QUNT]
359553
359469
-
Tyr
GTA
[ENA]
¡û
>C151093253
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
3490179
3490263
+
Tyr
GTA
-
¡û
>W1511432335
JUGL01000009
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
165540
165624
+
Tyr
GTA
[ENA]
¡û
>W1511509268
JXQX01000012
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
123263
123347
+
Tyr
GTA
[ENA]
¡û
>W1511528723
JYIU01000045
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
2127
2043
-
Tyr
GTA
[ENA]
¡û
>W1511528953
JYIZ01000057
Actinomycetota
Microbacterium terrae DSM 12510 [JYIZ]
78743
78827
+
Tyr
GTA
[ENA]
¡û
>W1511584655
LAVO01000010
Actinomycetota
Microbacterium chocolatum SIT 101 [LAVO]
60051
59967
-
Tyr
GTA
[ENA]
¡û
>C161063183
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
430730
430814
+
Tyr
GTA
[Ensembl]
¡û
>C161067246
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
2902363
2902281
-
Tyr
GTA
[Ensembl]
¡û
>C161090890
CP015810
Actinomycetota
Microbacterium chocolatum SIT 101 [CP015810]
75479
75395
-
Tyr
GTA
-
¡û
>W1610068303
BCRF01000026
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
29921
29837
-
Tyr
GTA
[ENA]
¡û
>W1610069755
BCST01000002
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
339975
339891
-
Tyr
GTA
[ENA]
¡û
>W1610112229
CZJS01000087
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
38938
38854
-
Tyr
GTA
[ENA]
¡û
>W1610112539
CZJY01000053
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
156689
156773
+
Tyr
GTA
[ENA]
¡û
>W1610722592
LMCS01000003
Actinomycetota
Microbacterium sp. Root322 [LMCS]
590296
590380
+
Tyr
GTA
[ENA]
¡û
>W1610722702
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
553758
553674
-
Tyr
GTA
[ENA]
¡û
>W1610723683
LMDN01000004
Actinomycetota
Leifsonia sp. Root4 [LMDN]
103051
102967
-
Tyr
GTA
[ENA]
¡û
>W1610724690
LMEH01000002
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
553306
553390
+
Tyr
GTA
[ENA]
¡û
>W1610726326
LMFN01000003
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
547548
547632
+
Tyr
GTA
[ENA]
¡û
>W1610726678
LMFU01000001
Actinomycetota
Agromyces sp. Root1464 [LMFU]
643515
643431
-
Tyr
GTA
[ENA]
¡û
>W1610726887
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
216083
215999
-
Tyr
GTA
[ENA]
¡û
>W1610727493
LMGL01000001
Actinomycetota
Microbacterium sp. Root166 [LMGL]
217440
217356
-
Tyr
GTA
[ENA]
¡û
>W1610727816
LMGR01000002
Actinomycetota
Leifsonia sp. Root60 [LMGR]
553275
553359
+
Tyr
GTA
[ENA]
¡û
>W1610727935
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
1598871
1598789
-
Tyr
GTA
[ENA]
¡û
>W1610729107
LMHS01000003
Actinomycetota
Microbacterium sp. Root180 [LMHS]
558171
558087
-
Tyr
GTA
[ENA]
¡û
>W1610730109
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
361445
361527
+
Tyr
GTA
[ENA]
¡û
>W1610730281
LMIR01000002
Actinomycetota
Agromyces sp. Root81 [LMIR]
1922792
1922876
+
Tyr
GTA
[ENA]
¡û
>W1610731179
LMJK01000001
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
1076291
1076375
+
Tyr
GTA
[ENA]
¡û
>W1610732925
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
622310
622394
+
Tyr
GTA
[ENA]
¡û
>W1610735672
LMMR01000007
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
244912
244996
+
Tyr
GTA
[ENA]
¡û
>W1610737841
LMOK01000003
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
608481
608397
-
Tyr
GTA
[ENA]
¡û
>W1610738354
LMOW01000001
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
2109512
2109596
+
Tyr
GTA
[ENA]
¡û
>W1610754110
LNFD01000330
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
1007
1091
+
Tyr
GTA
[ENA]
¡û
>W1710065676
BCRF01000026
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
29921
29837
-
Tyr
GTA
[ENA]
¡û
>W1710067128
BCST01000002
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
339975
339891
-
Tyr
GTA
[ENA]
¡û
>W1710114933
CZJS01000087
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
38938
38854
-
Tyr
GTA
[ENA]
¡û
>W1710115243
CZJY01000053
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
156689
156773
+
Tyr
GTA
[ENA]
¡û
>W1710535590
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
2958107
2958023
-
Tyr
GTA
[ENA]
¡û
>W1710570899
FOVM01000001
Actinomycetota
Mycetocola miduiensis [FOVM]
316126
316044
-
Tyr
GTA
[ENA]
¡û
>W1710575375
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
695930
696014
+
Tyr
GTA
[ENA]
¡û
>W1710594694
FSRJ01000003
Actinomycetota
Agromyces cerinus subsp. cerinus [FSRJ]
645861
645945
+
Tyr
GTA
[ENA]
¡û
>W1710599954
FTPO01000001
Actinomycetota
Microbacterium sp. RU33B [FTPO]
325244
325326
+
Tyr
GTA
[ENA]
¡û
>W1710603990
FUZP01000001
Actinomycetota
Okibacterium fritillariae [FUZP]
748882
748966
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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