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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180461 (37 seq.)
>W1710906981
LNOL01000016
Betaproteobacteria
Alcaligenes faecalis [LNOL]
39257
39341
+
Leu
GAG
[ENA]
¡û
>W1710995930
LQAS01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
223627
223543
-
Leu
GAG
[ENA]
¡û
>W1711710483
MSZN01000001
Betaproteobacteria
Alcaligenes faecalis [MSZN]
114856
114772
-
Leu
GAG
[ENA]
¡û
>W1711710532
MSZO01000002
Betaproteobacteria
Alcaligenes faecalis [MSZO]
277654
277738
+
Leu
GAG
[ENA]
¡û
>W1711710628
MSZP01000011
Betaproteobacteria
Alcaligenes faecalis [MSZP]
114683
114599
-
Leu
GAG
[ENA]
¡û
>W1711710665
MSZQ01000011
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
25860
25944
+
Leu
GAG
[ENA]
¡û
>W1711710714
MSZR01000013
Betaproteobacteria
Alcaligenes faecalis [MSZR]
25919
26003
+
Leu
GAG
[ENA]
¡û
>W1711711863
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
290691
290775
+
Leu
GAG
[ENA]
¡û
>C171115526
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
2794995
2794911
-
Leu
GAG
-
¡û
>W131051758
AMXV01000012
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
150298
150214
-
Leu
GAG
[ENA]
¡û
>W131223056
AUBT01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
367872
367788
-
Leu
GAG
[ENA]
¡û
>W141104421
AVOG02000012
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
119558
119474
-
Leu
GAG
[ENA]
¡û
>W141237708
BBJQ01000002
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
118931
118847
-
Leu
GAG
[ENA]
¡û
>WENV183741321
PJUF01085105
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
204
288
+
Leu
GAG
[ENA]
¢þ
>WENV170646013
JQGF01006587
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
5283
5367
+
Leu
GAG
[ENA]
¢þ
>WENV170655593
JTFN01049401
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
88
4
-
Leu
GAG
[ENA]
¢þ
>WENV170655616
JTFN01052797
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
15
99
+
Leu
GAG
[ENA]
¢þ
>WENV170655683
JTFN01057306
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
717
633
-
Leu
GAG
[ENA]
¢þ
>WENV170657128
JTFO01089357
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
717
633
-
Leu
GAG
[ENA]
¢þ
>WENV170966033
MTEV01012280
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
2453
2537
+
Leu
GAG
[ENA]
¢þ
>C181053245
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
2910093
2910009
-
Leu
GAG
-
¡û
>C181088603
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
2547456
2547372
-
Leu
GAG
-
¡û
>C191085282
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
3093675
3093591
-
Leu
GAG
-
¡û
>C191091183
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
1416156
1416072
-
Leu
GAG
-
¡û
>C191113959
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
3822120
3822036
-
Leu
GAG
-
¡û
>C191149669
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
706633
706549
-
Leu
GAG
-
¡û
>W1810583869
QEXO01000001
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
276488
276572
+
Leu
GAG
[ENA]
¡û
>W1511321040
JQCV01000007
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
189686
189770
+
Leu
GAG
[ENA]
¡û
>C11118215
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
1962428
1962344
-
Leu
GAG
[Ensembl]
¡û
>W1511537453
JZBR01000002
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
786536
786452
-
Leu
GAG
[ENA]
¡û
>C161051382
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
786536
786452
-
Leu
GAG
[Ensembl]
¡û
>W1610093556
CYTB01000003
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
3264
3348
+
Leu
GAG
[ENA]
¡û
>W121091200
AKMR01000004
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
119407
119323
-
Leu
GAG
[ENA]
¡û
>W1610765995
LNOL01000016
Betaproteobacteria
Alcaligenes faecalis [LNOL]
39257
39341
+
Leu
GAG
[ENA]
¡û
>W1610850587
LQAS01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
223627
223543
-
Leu
GAG
[ENA]
¡û
>W1610921540
LSUO01000027
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
5071
5155
+
Leu
GAG
[ENA]
¡û
>W1710082538
BDHG01000006
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
3272
3356
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK