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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180471 (44 seq.)
>W1710870076
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
435966
436042
+
Met
CAT
[ENA]
¡û
>W1710876533
LMPH01000004
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
318686
318612
-
Met
CAT
[ENA]
¡û
>W1710909100
LNQG01000004
Actinomycetota
Microbacterium enclense [LNQG]
443864
443938
+
Met
CAT
[ENA]
¡û
>W1711270782
LZEM01000022
Actinomycetota
Microbacterium arborescens [LZEM]
27504
27428
-
Met
CAT
[ENA]
¡û
>W1711385597
MEEJ01000008
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
173199
173273
+
Met
CAT
[ENA]
¡û
>W1711385691
MEEL01000038
Actinomycetota
Microbacterium sp. SCN 69-37 [MEEL]
2303
2227
-
Met
CAT
[ENA]
¡û
>W131162157
AQYI01000004
Actinomycetota
Microbacterium paraoxydans 77MFTsu3.2 [AQYI]
269116
269190
+
Met
CAT
[ENA]
¡û
>W1711501602
MKRU01000095
Actinomycetota
Microbacterium sp. 69-7 [MKRU]
34552
34628
+
Met
CAT
[ENA]
¡û
>W1711501804
MKSA01000166
Actinomycetota
Microbacterium sp. 70-38 [MKSA]
303
227
-
Met
CAT
[ENA]
¡û
>W1711503474
MKTQ01000014
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
443923
443849
-
Met
CAT
[ENA]
¡û
>W1711503516
MKTR01000013
Actinomycetota
Microbacterium sp. 67-17 [MKTR]
110355
110431
+
Met
CAT
[ENA]
¡û
>C171065797
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
187577
187651
+
Met
CAT
-
¡û
>WENV180692146
OCZS010375800
[OCZS] soil metagenome; soil
356
430
+
Ile2
CAT
[ENA]
¢þ
>WENV170175782
CEOS01007346
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
227
151
-
Met
CAT
[ENA]
¢þ
>WENV170330823
CESW01004700
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
422
498
+
Met
CAT
[ENA]
¢þ
>WENV170827604
MDSY01132623
[MDSY] marine metagenome; seawater
5146
5220
+
Met
CAT
[ENA]
¢þ
>WENV170919883
MDTF01013253
[MDTF] marine metagenome; seawater
371
447
+
Met
CAT
[ENA]
¢þ
>WENV170933207
MDTG01216931
[MDTG] marine metagenome; seawater
326
402
+
Met
CAT
[ENA]
¢þ
>W141484296
JFYO01000001
Actinomycetota
Microbacterium oleivorans [JFYO]
268759
268835
+
Met
CAT
[ENA]
¡û
>C181115709
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
2108560
2108636
+
Met
CAT
-
¡û
>C191056024
CP027929
Actinomycetota
Microbacterium sp. SGAir0570 [CP027929]
1338277
1338351
+
Met
CAT
-
¡û
>C191144030
CP035494
Actinomycetota
Microbacterium protaetiae DFW100M-13 [CP035494]
3447559
3447485
-
Met
CAT
-
¡û
>W141739357
JNNT01000129
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
5965
5891
-
Met
CAT
[ENA]
¡û
>W1910913712
NHRF01000004
Actinomycetota
Microbacterium sp. AISO3 [NHRF]
166987
166913
-
Met
CAT
[ENA]
¡û
>W1911075314
NMUN01000004
Actinomycetota
Microbacterium sp. BR1 [NMUN]
292612
292686
+
Met
CAT
[ENA]
¡û
>W1911535338
OLMV01000001
Actinomycetota
Microbacterium timonense Marseille-P5731 [OLMV]
507363
507289
-
Met
CAT
[ENA]
¡û
>W1810538359
QDFT01000023
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
25647
25573
-
Met
CAT
[ENA]
¡û
>W1810570341
QEIJ01000001
Actinomycetota
Microbacterium sp. Gd 4-13 [QEIJ]
694956
695030
+
Met
CAT
[ENA]
¡û
>W1810861497
QTTX01000002
Actinomycetota
Microbacterium sp. 1294 [QTTX]
1147801
1147727
-
Met
CAT
[ENA]
¡û
>W1511432625
JUGQ01000002
Actinomycetota
Microbacterium sp. CF335 [JUGQ]
450636
450560
-
Met
CAT
[ENA]
¡û
>W1511528818
JYIW01000026
Actinomycetota
Microbacterium oxydans BEL4b [JYIW]
545850
545774
-
Met
CAT
[ENA]
¡û
>W1511528999
JYJA01000041
Actinomycetota
Microbacterium trichothecenolyticum DSM 8608 [JYJA]
224183
224109
-
Met
CAT
[ENA]
¡û
>C161090860
CP015810
Actinomycetota
Microbacterium chocolatum SIT 101 [CP015810]
2260099
2260175
+
Met
CAT
-
¡û
>W1610068331
BCRG01000002
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
338658
338582
-
Met
CAT
[ENA]
¡û
>W121061227
AJGR01000116
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
65432
65508
+
Met
CAT
[ENA]
¡û
>W1610732422
LMKF01000031
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
435966
436042
+
Met
CAT
[ENA]
¡û
>W1610738879
LMPH01000004
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
318686
318612
-
Met
CAT
[ENA]
¡û
>W1610767459
LNQG01000004
Actinomycetota
Microbacterium enclense [LNQG]
443864
443938
+
Met
CAT
[ENA]
¡û
>W1611030346
LZEM01000022
Actinomycetota
Microbacterium arborescens [LZEM]
27504
27428
-
Met
CAT
[ENA]
¡û
>W1710065704
BCRG01000002
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
338658
338582
-
Met
CAT
[ENA]
¡û
>W1710525413
FNJN01000003
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
322042
321966
-
Met
CAT
[ENA]
¡û
>W1710565105
FOQZ01000001
Actinomycetota
Microbacterium saccharophilum unc380mfsha3.1 [FOQZ]
1114398
1114474
+
Met
CAT
[ENA]
¡û
>W1710597980
FTNQ01000001
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
373870
373946
+
Met
CAT
[ENA]
¡û
>W1710600066
FTPQ01000002
Actinomycetota
Microbacterium sp. RU1D [FTPQ]
281098
281024
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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