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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180498 (7 seq.)
>WENV180765732
ODID01000005
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
399
484
+
Tyr
GTA
[ENA]
¡û
>WENV180780065
ODIN01041808
[ODIN] human metagenome; G_DNA_Throat
382
467
+
Tyr
GTA
[ENA]
¡û
>WENV180783522
ODIQ01009750
[ODIQ] human metagenome; G_DNA_Tongue dorsum
390
305
-
Tyr
GTA
[ENA]
¡û
>WENV180808367
ODJK01000008
[ODJK] human metagenome; G_DNA_Subgingival plaque
449
534
+
Tyr
GTA
[ENA]
¡û
>WENV180913341
ODST01005869
[ODST] human metagenome; G_DNA_Attached/Keratinized gingiva
138
223
+
Tyr
GTA
[ENA]
¡û
>WENV180950470
ODUH01000006
[ODUH] human metagenome; G_DNA_Subgingival plaque
17804
17889
+
Tyr
GTA
[ENA]
¡û
>WENV181176094
OEJR01000007
[OEJR] human metagenome; G_DNA_Saliva
9323
9408
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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