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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180607 (17 seq.)
>W131228874
AUGI01000032
Bacteroidota
Hugenholtzia roseola DSM 9546 [AUGI]
62806
62730
-
Asn
GTT
[ENA]
¡û
>WENV180354717
OBNE01010345
[OBNE] groundwater metagenome; groundwater
349
271
-
Asn
GTT
[ENA]
¢þ
>W141251933
CBQZ010000001
Bacteroidota
Cardinium endosymbiont of Bemisia tabaci cBtQ1 of Bemisia tabaci [CBQZ]
605396
605470
+
Asn
GTT
[ENA]
¡û
>WENV170008303
ANMQ01000007
[ANMQ] wasp metagenome; Encarsia pergandiella (wasp)
734
660
-
Asn
GTT
[ENA]
¢þ
>WENV170467175
CEVE01121386
[CEVE] marine metagenome genome assembly TARA_124_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
329
405
+
Asn
GTT
[ENA]
¢þ
>WENV170654471
JRYL01000009
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
237731
237807
+
Asn
GTT
[ENA]
¢þ
>WENV170890936
MDTD01016844
[MDTD] marine metagenome; seawater
6740
6816
+
Asn
GTT
[ENA]
¢þ
>WENV170901408
MDTD01170081
[MDTD] marine metagenome; seawater
11
85
+
Asn
GTT
[ENA]
¢þ
>WENV170901475
MDTD01171076
[MDTD] marine metagenome; seawater
11
85
+
Asn
GTT
[ENA]
¢þ
>C181062205
CP022339
Bacteroidota
Cardinium endosymbiont of Sogatella furcifera cSfur [CP022339]
360826
360752
-
Asn
GTT
-
¡û
>C191115514
CP033920
Bacteroidota
Chryseobacterium carnipullorum G0188 [CP033920]
1589034
1588960
-
Asn
GTT
-
¡û
>C191115586
CP033921
Bacteroidota
Chryseobacterium carnipullorum F9942 [CP033921]
5064830
5064756
-
Asn
GTT
-
¡û
>W1910635683
LNJX01000025
Bacteroidota
Cardinium endosymbiont of Bemisia tabaci [LNJX]
6681
6755
+
Asn
GTT
[ENA]
¡û
>W1911749873
QWJI01000003
Bacteroidota
Cardinium endosymbiont of Culicoides punctatus of Culicoides punctatus cCpun [QWJI]
34709
34635
-
Asn
GTT
[ENA]
¡û
>C151075990
CP011059
Bacteroidota
Elizabethkingia miricola BM10 [CP011059]
2809941
2810015
+
Asn
GTT
[Ensembl]
¡û
>C151076128
CP011071
Bacteroidota
Allomuricauda lutaonensis CC-HSB-11 [CP011071]
1705458
1705534
+
Asn
GTT
[Ensembl]
¡û
>C131020411
HE983995
Bacteroidota
Cardinium endosymbiont cEper1 of Encarsia pergandiella [HE983995]
330869
330795
-
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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