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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180615 (53 seq.)
>WENV180956919
ODUK01005689
[ODUK] human metagenome; G_DNA_Stool
1098
1013
-
Leu
GAG
[ENA]
¡û
>WENV181235403
OFEY01000273
[OFEY] mouse gut metagenome; faeces
27503
27586
+
Leu
GAG
[ENA]
¡û
>WENV181237530
OFFB01000417
[OFFB] mouse gut metagenome; faeces
27469
27552
+
Leu
GAG
[ENA]
¡û
>WENV181238810
OFFC01004514
[OFFC] mouse gut metagenome; faeces
3177
3260
+
Leu
GAG
[ENA]
¡û
>WENV181239295
OFFD01000394
[OFFD] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181240176
OFFE01000256
[OFFE] mouse gut metagenome; faeces
27468
27551
+
Leu
GAG
[ENA]
¡û
>WENV181241271
OFFF01000319
[OFFF] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181242437
OFFG01000294
[OFFG] mouse gut metagenome; faeces
19153
19070
-
Leu
GAG
[ENA]
¡û
>WENV181243629
OFFH01000332
[OFFH] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181244644
OFFI01000390
[OFFI] mouse gut metagenome; faeces
13957
14040
+
Leu
GAG
[ENA]
¡û
>WENV181245742
OFFJ01001548
[OFFJ] mouse gut metagenome; faeces
13486
13403
-
Leu
GAG
[ENA]
¡û
>WENV181246602
OFFK01000199
[OFFK] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181249400
OFFM01004997
[OFFM] mouse gut metagenome; faeces
933
850
-
Leu
GAG
[ENA]
¡û
>WENV181249995
OFFN01000391
[OFFN] mouse gut metagenome; faeces
15594
15677
+
Leu
GAG
[ENA]
¡û
>WENV181250907
OFFO01000416
[OFFO] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181251763
OFFP01000187
[OFFP] mouse gut metagenome; faeces
27467
27550
+
Leu
GAG
[ENA]
¡û
>WENV181252947
OFFQ01000326
[OFFQ] mouse gut metagenome; faeces
13486
13403
-
Leu
GAG
[ENA]
¡û
>WENV181254039
OFFR01000273
[OFFR] mouse gut metagenome; faeces
14252
14335
+
Leu
GAG
[ENA]
¡û
>WENV181255173
OFFS01000475
[OFFS] mouse gut metagenome; faeces
13486
13403
-
Leu
GAG
[ENA]
¡û
>WENV181256065
OFFT01000181
[OFFT] mouse gut metagenome; faeces
27469
27552
+
Leu
GAG
[ENA]
¡û
>WENV181257217
OFFU01000350
[OFFU] mouse gut metagenome; faeces
27466
27549
+
Leu
GAG
[ENA]
¡û
>WENV181258421
OFFV01000242
[OFFV] mouse gut metagenome; faeces
19153
19070
-
Leu
GAG
[ENA]
¡û
>WENV181259526
OFFW01000297
[OFFW] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181260558
OFFX01000201
[OFFX] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181261913
OFFY01000635
[OFFY] mouse gut metagenome; faeces
15595
15678
+
Leu
GAG
[ENA]
¡û
>WENV181263142
OFFZ01000232
[OFFZ] mouse gut metagenome; faeces
13958
14041
+
Leu
GAG
[ENA]
¡û
>WENV181264817
OFGA01009129
[OFGA] mouse gut metagenome; faeces
3276
3193
-
Leu
GAG
[ENA]
¡û
>WENV181266198
OFGB01022952
[OFGB] mouse gut metagenome; faeces
658
575
-
Leu
GAG
[ENA]
¡û
>WENV181267348
OFGC01003606
[OFGC] mouse gut metagenome; faeces
3272
3189
-
Leu
GAG
[ENA]
¡û
>WENV181267950
OFGD01000231
[OFGD] mouse gut metagenome; faeces
19153
19070
-
Leu
GAG
[ENA]
¡û
>WENV181269192
OFGE01000629
[OFGE] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181270567
OFGF01000265
[OFGF] mouse gut metagenome; faeces
27468
27551
+
Leu
GAG
[ENA]
¡û
>WENV181271743
OFGG01000224
[OFGG] mouse gut metagenome; faeces
27458
27541
+
Leu
GAG
[ENA]
¡û
>WENV181273094
OFGH01000319
[OFGH] mouse gut metagenome; faeces
19153
19070
-
Leu
GAG
[ENA]
¡û
>WENV181274436
OFGI01000319
[OFGI] mouse gut metagenome; faeces
13486
13403
-
Leu
GAG
[ENA]
¡û
>WENV181275767
OFGJ01050687
[OFGJ] mouse gut metagenome; faeces
459
376
-
Leu
GAG
[ENA]
¡û
>WENV181276039
OFGK01000434
[OFGK] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181277277
OFGL01000989
[OFGL] mouse gut metagenome; faeces
4097
4180
+
Leu
GAG
[ENA]
¡û
>WENV181278178
OFGM01000305
[OFGM] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181279308
OFGN01000368
[OFGN] mouse gut metagenome; faeces
27469
27552
+
Leu
GAG
[ENA]
¡û
>WENV181280491
OFGO01000404
[OFGO] mouse gut metagenome; faeces
13486
13403
-
Leu
GAG
[ENA]
¡û
>WENV181281791
OFGP01000648
[OFGP] mouse gut metagenome; faeces
19153
19070
-
Leu
GAG
[ENA]
¡û
>WENV181282987
OFGQ01000269
[OFGQ] mouse gut metagenome; faeces
19153
19070
-
Leu
GAG
[ENA]
¡û
>WENV181284236
OFGR01000367
[OFGR] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181287003
OFGX01000344
[OFGX] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181288595
OFGZ01000355
[OFGZ] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181289579
OFHA01000410
[OFHA] mouse gut metagenome; faeces
23812
23729
-
Leu
GAG
[ENA]
¡û
>WENV181290749
OFHB01000143
[OFHB] mouse gut metagenome; faeces
27468
27551
+
Leu
GAG
[ENA]
¡û
>WENV181299164
OFHM01001936
[OFHM] mouse gut metagenome; faeces
9247
9164
-
Leu
GAG
[ENA]
¡û
>WENV181300172
OFHN01000311
[OFHN] mouse gut metagenome; faeces
19153
19070
-
Leu
GAG
[ENA]
¡û
>WENV181301662
OFHO01000566
[OFHO] mouse gut metagenome; faeces
14252
14335
+
Leu
GAG
[ENA]
¡û
>WENV181302890
OFHP01000258
[OFHP] mouse gut metagenome; faeces
13957
14040
+
Leu
GAG
[ENA]
¡û
>WENV183646600
OQVR01007127
[OQVR] human gut metagenome; human gut
405
322
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK