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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180705 (25 seq.)
>W131003176
AHAF01000011
Bacillota
Veillonella seminalis ACS-216-V-Col6b [AHAF]
44750
44835
+
Leu
GAG
[ENA]
¡û
>W131221500
AUAN01000003
Bacillota
Veillonella magna DSM 19857 [AUAN]
166093
166178
+
Leu
GAG
[ENA]
¡û
>WENV180129713
OATE01000043
[OATE] human gut metagenome; faeces
56633
56718
+
Leu
GAG
[ENA]
¡û
>WENV180180604
OAWL01000059
[OAWL] human gut metagenome; faeces
333
418
+
Leu
GAG
[ENA]
¡û
>WENV180181103
OAWM01000523
[OAWM] human gut metagenome; faeces
333
418
+
Leu
GAG
[ENA]
¡û
>WENV180411568
OBUZ01000100
[OBUZ] human gut metagenome; faeces
25614
25699
+
Leu
GAG
[ENA]
¡û
>WENV180481513
OBZF01000169
[OBZF] human gut metagenome; faeces
26263
26178
-
Leu
GAG
[ENA]
¡û
>WENV180504943
OCAO01000275
[OCAO] human gut metagenome; faeces
81
166
+
Leu
GAG
[ENA]
¡û
>WENV181187640
OENZ01000054
[OENZ] human gut metagenome; human gut
25614
25699
+
Leu
GAG
[ENA]
¡û
>WENV181889301
OGXN01000069
[OGXN] human gut metagenome; faeces
23012
22927
-
Leu
GAG
[ENA]
¡û
>WENV182399912
OIEP01000033
[OIEP] human gut metagenome; human gut
56227
56312
+
Leu
GAG
[ENA]
¡û
>WENV182402739
OIET01000065
[OIET] human gut metagenome; human gut
48256
48341
+
Leu
GAG
[ENA]
¡û
>WENV182404637
OIEV01000044
[OIEV] human gut metagenome; human gut
48306
48391
+
Leu
GAG
[ENA]
¡û
>WENV182405548
OIEV01009426
[OIEV] human gut metagenome; human gut
93
178
+
Leu
GAG
[ENA]
¡û
>WENV182834648
OKFE01000954
[OKFE] human gut metagenome; human gut
165
250
+
Leu
GAG
[ENA]
¡û
>WENV182840655
OKHN01000099
[OKHN] human gut metagenome; human gut
26923
26838
-
Leu
GAG
[ENA]
¡û
>WENV182847186
OKJW01000017
[OKJW] human gut metagenome; human gut
26923
26838
-
Leu
GAG
[ENA]
¡û
>WENV182949685
OKVQ01000039
[OKVQ] human gut metagenome; human gut
88776
88691
-
Leu
GAG
[ENA]
¡û
>WENV183781208
PPYF01195403
[PPYF] human gut metagenome; stool from patient with Crohn's disease
27097
27012
-
Leu
GAG
[ENA]
¡û
>W2011005981
NMZQ01000066
Bacillota
Veillonella sp. R32 [NMZQ]
396
311
-
Leu
GAG
[ENA]
¡û
>W2011480471
RQUZ01000013
Bacillota
Veillonella seminalis ADV4313-2 [RQUZ]
27082
26997
-
Leu
GAG
[ENA]
¡û
>W2011845434
UHIO01000001
Bacillota
Veillonella criceti NCTC12020 [UHIO]
1122843
1122758
-
Leu
GAG
[ENA]
¡û
>W2012228868
WBKH01000011
Bacillota
Veillonella seminalis CCUG 65427 [WBKH]
27285
27200
-
Leu
GAG
[ENA]
¡û
>W2110224020
JACJLA010000004
Bacillota
Veillonella magna An537 [JACJLA]
138816
138901
+
Leu
GAG
[ENA]
¡û
>W2110225450
JACJMC010000004
Bacillota
Veillonella magna An354 [JACJMC]
138816
138901
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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