This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180747 (51 seq.)
>W1710786279
LJIV01000010
Bacillota
Leuconostoc lactis [LJIV]
140175
140101
-
Lys
TTT
[ENA]
¡û
>W1711627392
MPLL01000002
Bacillota
Leuconostoc lactis [MPLL]
141525
141451
-
Lys
TTT
[ENA]
¡û
>W1711627486
MPLN01000002
Bacillota
Leuconostoc lactis [MPLN]
141525
141451
-
Lys
TTT
[ENA]
¡û
>W1711999750
NDXG01000002
Bacillota
Leuconostoc citreum [NDXG]
27187
27261
+
Lys
TTT
[ENA]
¡û
>C171047485
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
892420
892494
+
Lys
TTT
-
¡û
>WENV180503297
OCAM01011003
[OCAM] human gut metagenome; faeces
911
985
+
Lys
TTT
[ENA]
¢þ
>WENV180564578
OCLE01001969
[OCLE] human gut metagenome; human gut
455
381
-
Lys
TTT
[ENA]
¢þ
>WENV182610752
OJJW01000394
[OJJW] metagenome; faeces
11372
11446
+
Lys
TTT
[ENA]
¢þ
>C08005981
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
465035
465109
+
Lys
TTT
[Ensembl]
¡û
>C191155324
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
558132
558206
+
Lys
TTT
-
¡û
>W141695491
JMEA01000001
Bacillota
Leuconostoc lactis [JMEA]
16394
16468
+
Lys
TTT
[ENA]
¡û
>W1910181828
BJMJ01000013
Bacillota
Leuconostoc lactis NBRC 12455 [BJMJ]
16398
16472
+
Lys
TTT
[ENA]
¡û
>W1910821985
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
1405461
1405535
+
Lys
TTT
[ENA]
¡û
>W1911177186
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
417417
417491
+
Lys
TTT
[ENA]
¡û
>W1911283566
NTJC01000001
Bacillota
Leuconostoc citreum TR116 [NTJC]
368172
368098
-
Lys
TTT
[ENA]
¡û
>W1911495478
OBMW01000024
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
37137
37063
-
Lys
TTT
[ENA]
¡û
>W1911540003
ONZM01000007
Bacillota
Leuconostoc carnosum MFPC16A2803 [ONZM]
394409
394335
-
Lys
TTT
[ENA]
¡û
>W1911541727
OOIO01000005
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
329195
329121
-
Lys
TTT
[ENA]
¡û
>W1911631710
PUFH01000005
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
707562
707488
-
Lys
TTT
[ENA]
¡û
>W1510046213
CCNG01000004
Bacillota
Leuconostoc citreum [CCNG]
238307
238381
+
Lys
TTT
[ENA]
¡û
>W1510046280
CCNH01000002
Bacillota
Leuconostoc citreum [CCNH]
264845
264919
+
Lys
TTT
[ENA]
¡û
>C10108504
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
537129
537055
-
Lys
TTT
[Ensembl]
¡û
>C11112608
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
38750
38824
+
Lys
TTT
[Ensembl]
¡û
>C11112854
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1404481
1404407
-
Lys
TTT
[Ensembl]
¡û
>W1511468948
JVUU01000012
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
198024
197950
-
Lys
TTT
[ENA]
¡û
>W1511469003
JVUV01000025
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
57353
57279
-
Lys
TTT
[ENA]
¡û
>W11137129
AEGQ01000079
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
141384
141310
-
Lys
TTT
[ENA]
¡û
>W11140937
AEMI01000018
Bacillota
Leuconostoc gelidum KCTC 3527 [AEMI]
19041
19115
+
Lys
TTT
[ENA]
¡û
>W11140965
AEMJ01000058
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
18956
19030
+
Lys
TTT
[ENA]
¡û
>W11142065
AEOR01001082
Bacillota
Leuconostoc lactis KCTC 3528 [AEOR]
1274
1200
-
Lys
TTT
[ENA]
¡û
>W11184731
BACM01001180
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
1366
1292
-
Lys
TTT
[ENA]
¡û
>C161100131
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
412992
412918
-
Lys
TTT
[Ensembl]
¡û
>C161107427
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1469217
1469143
-
Lys
TTT
[Ensembl]
¡û
>W121127456
CAGE01000019
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
9488
9414
-
Lys
TTT
[ENA]
¡û
>W121127502
CAGF01000019
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
9492
9418
-
Lys
TTT
[ENA]
¡û
>W121127550
CAGG01000014
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
9491
9417
-
Lys
TTT
[ENA]
¡û
>W1610187654
FBSX01000009
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
30333
30407
+
Lys
TTT
[ENA]
¡û
>W1610187694
FBSY01000001
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
203928
203854
-
Lys
TTT
[ENA]
¡û
>W1610187760
FBTB01000011
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
61588
61514
-
Lys
TTT
[ENA]
¡û
>W1610187814
FBTC01000028
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
30321
30395
+
Lys
TTT
[ENA]
¡û
>W1610187830
FBTD01000008
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
31460
31534
+
Lys
TTT
[ENA]
¡û
>W1610187901
FBTU01000028
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
36080
36154
+
Lys
TTT
[ENA]
¡û
>C131007849
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1413313
1413239
-
Lys
TTT
[Ensembl]
¡û
>C131008327
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
1219369
1219295
-
Lys
TTT
[Ensembl]
¡û
>W1610650134
LJIV01000010
Bacillota
Leuconostoc lactis [LJIV]
140175
140101
-
Lys
TTT
[ENA]
¡û
>W1710189270
FBSX01000009
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
30333
30407
+
Lys
TTT
[ENA]
¡û
>W1710189310
FBSY01000001
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
203928
203854
-
Lys
TTT
[ENA]
¡û
>W1710189376
FBTB01000011
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
61588
61514
-
Lys
TTT
[ENA]
¡û
>W1710189430
FBTC01000028
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
30321
30395
+
Lys
TTT
[ENA]
¡û
>W1710189446
FBTD01000008
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
31460
31534
+
Lys
TTT
[ENA]
¡û
>W1710189517
FBTU01000028
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
36080
36154
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK