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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180749 (10 seq.)
>WENV181371806
OFQW01000553
[OFQW] wastewater metagenome; Exp Tend NO 90WW
2286
2371
+
Leu
TAA
[ENA]
¡û
>WENV181372476
OFQX01000009
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
39429
39514
+
Leu
TAA
[ENA]
¡û
>WENV181375597
OFQZ01000258
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
19932
20017
+
Leu
TAA
[ENA]
¡û
>WENV181380645
OFRE01001483
[OFRE] wastewater metagenome; Exp Tend NO 50WW
580
665
+
Leu
TAA
[ENA]
¡û
>WENV181389496
OFRO01000211
[OFRO] wastewater metagenome; Exp Tend NO 10WW
22047
21962
-
Leu
TAA
[ENA]
¡û
>WENV170009602
APMI01000839
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
21076
20991
-
Leu
TAA
[ENA]
¡û
>C211196465
CP064959
Unclassified
Candidatus Saccharibacteria bacterium [CP064959]
470395
470310
-
Leu
TAA
-
¡û
>C211198571
CP065015
Unclassified
Candidatus Saccharibacteria bacterium [CP065015]
39078
38993
-
Leu
TAA
-
¡û
>C211198651
CP065017
Unclassified
Candidatus Saccharibacteria bacterium [CP065017]
59404
59319
-
Leu
TAA
-
¡û
>C131016151
CP005957
Unclassified
Candidatus Saccharimonas aalborgensis [CP005957]
220830
220745
-
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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