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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180778 (36 seq.)
>W1710920250
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
801021
800937
-
Leu
TAG
[ENA]
¡û
>W1710920814
LNYX01000031
Gammaproteobacteria
Legionella spiritensis [LNYX]
10910
10826
-
Leu
TAG
[ENA]
¡û
>W1711424115
MIDT01000115
Gammaproteobacteria
Xanthomonadales bacterium GWF1_69_6 [MIDT]
9785
9701
-
Leu
TAG
[ENA]
¡û
>W1711767952
MVBK01000004
Gammaproteobacteria
Thioalkalivibrio denitrificans [MVBK]
4183
4267
+
Leu
TAG
[ENA]
¡û
>WENV180293769
OBIY01001031
[OBIY] beach sand metagenome; beach sand
496
580
+
Leu
TAG
[ENA]
¢þ
>WENV180309549
OBJS01006912
[OBJS] beach sand metagenome; beach sand
1415
1331
-
Leu
TAG
[ENA]
¢þ
>WENV180359881
OBNS01056021
[OBNS] marine metagenome; Seawater
213
297
+
Leu
TAG
[ENA]
¢þ
>W141094218
AVCH01000149
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
9988
9904
-
Leu
TAG
[ENA]
¡û
>W141094364
AVCK01000063
Gammaproteobacteria
Arenimonas metalli CF5-1 [AVCK]
11380
11296
-
Leu
TAG
[ENA]
¡û
>WENV182546122
OJBO01001150
[OJBO] seawater metagenome; Sea water
645
729
+
Leu
TAG
[ENA]
¢þ
>WENV182546802
OJBP01004148
[OJBP] seawater metagenome; Sea water
1215
1131
-
Leu
TAG
[ENA]
¢þ
>WENV182589184
OJIA01000105
[OJIA] seawater metagenome; Sea water
2557
2473
-
Leu
TAG
[ENA]
¢þ
>WENV183513612
OMKS01006298
[OMKS] sediment metagenome; hot spring sediment
4948
4864
-
Leu
TAG
[ENA]
¢þ
>WENV170577903
FSSH01002527
[FSSH] freshwater metagenome; drinking water
3393
3309
-
Leu
TAG
[ENA]
¢þ
>WENV170653090
JRYI01002861
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
214
298
+
Leu
TAG
[ENA]
¢þ
>WENV170668002
LADL02000058
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
4616
4700
+
Leu
TAG
[ENA]
¢þ
>WENV170713417
LNFM01030587
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
361
445
+
Leu
TAG
[ENA]
¢þ
>C181019731
CP016397
Gammaproteobacteria
Legionella clemsonensis CDC-D5610 [CP016397]
2558826
2558742
-
Leu
TAG
-
¡û
>C181225363
LT906457
Gammaproteobacteria
Legionella spiritensis NCTC11990 [LT906457]
899497
899581
+
Leu
TAG
-
¡û
>C191073631
CP031093
Gammaproteobacteria
Hydrocarboniclastica marina soil36-7 [CP031093]
1485820
1485904
+
Leu
TAG
-
¡û
>C191209820
LR134383
Gammaproteobacteria
Legionella jordanis NCTC11533 [LR134383]
649905
649989
+
Leu
TAG
-
¡û
>W1910371612
FUFP01000020
Gammaproteobacteria
Halomonas utahensis P-halo [FUFP]
672421
672337
-
Leu
TAG
[ENA]
¡û
>W1911245528
NSKD01000002
Gammaproteobacteria
Halovibrio salipaludis YL5-2 [NSKD]
485456
485372
-
Leu
TAG
[ENA]
¡û
>W1911817839
QZMU01000001
Gammaproteobacteria
Thiohalobacter thiocyanaticus Hrh1 [QZMU]
373662
373578
-
Leu
TAG
[ENA]
¡û
>W1810354835
PVLF01000001
Gammaproteobacteria
Arenimonas caeni z29 [PVLF]
28092
28008
-
Leu
TAG
[ENA]
¡û
>C151001109
AP012978
Gammaproteobacteria
endosymbiont of unidentified scaly snail isolate Monju [AP012978]
1509309
1509225
-
Leu
TAG
[Ensembl]
¡û
>C151016180
CP007029
Gammaproteobacteria
Thioalkalivibrio paradoxus ARh 1 [CP007029]
2907843
2907759
-
Leu
TAG
[Ensembl]
¡û
>W1510018821
BBUM02000050
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
28727
28811
+
Leu
TAG
[ENA]
¡û
>W11178597
AGFB01000007
Gammaproteobacteria
Thioalkalivibrio thiocyanoxidans ARh 4 [AGFB]
10263
10179
-
Leu
TAG
[ENA]
¡û
>W1610580135
LBAX01000007
Gammaproteobacteria
Legionella jordanis [LBAX]
88287
88203
-
Leu
TAG
[ENA]
¡û
>W1610778148
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
801021
800937
-
Leu
TAG
[ENA]
¡û
>W1610778712
LNYX01000031
Gammaproteobacteria
Legionella spiritensis [LNYX]
10910
10826
-
Leu
TAG
[ENA]
¡û
>W1710528397
FNNE01000006
Gammaproteobacteria
Marinobacter mobilis [FNNE]
210868
210952
+
Leu
TAG
[ENA]
¡û
>W1710550778
FOFO01000007
Gammaproteobacteria
Ectothiorhodospira magna [FOFO]
72810
72726
-
Leu
TAG
[ENA]
¡û
>W1710569166
FOUE01000002
Gammaproteobacteria
Marinobacter zhejiangensis [FOUE]
623612
623696
+
Leu
TAG
[ENA]
¡û
>W1710699147
LBAX01000007
Gammaproteobacteria
Legionella jordanis [LBAX]
88287
88203
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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