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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180781 (89 seq.)
>W1711022901
LRAC01000136
Bacillota
Paenibacillus sp. DMB5 [LRAC]
3876
3951
+
Arg
TCT
[ENA]
¡û
>W131170159
ARFI01000003
Bacillota
Paenibacillus sp. HW567 [ARFI]
400794
400871
+
Arg
TCT
[ENA]
¡û
>W131170160
ARFI01000003
Bacillota
Paenibacillus sp. HW567 [ARFI]
416304
416227
-
Arg
TCT
[ENA]
¡û
>W1711309538
MAQW01000030
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
307410
307487
+
Arg
TCT
[ENA]
¡û
>W1711309539
MAQW01000030
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
352464
352387
-
Arg
TCT
[ENA]
¡û
>W131235814
AULW01000016
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
6413
6337
-
Arg
TCT
[ENA]
¡û
>W1711499563
MKQK01000073
Bacillota
Paenibacillus odorifer [MKQK]
23416
23493
+
Arg
TCT
[ENA]
¡û
>W1711499613
MKQL01000020
Bacillota
Paenibacillus odorifer [MKQL]
24611
24534
-
Arg
TCT
[ENA]
¡û
>W1711499692
MKQM01000063
Bacillota
Paenibacillus odorifer [MKQM]
85765
85842
+
Arg
TCT
[ENA]
¡û
>W1711499742
MKQN01000021
Bacillota
Paenibacillus odorifer [MKQN]
24774
24697
-
Arg
TCT
[ENA]
¡û
>W1711499825
MKQO01000058
Bacillota
Paenibacillus odorifer [MKQO]
15788
15711
-
Arg
TCT
[ENA]
¡û
>W1711499883
MKQP01000026
Bacillota
Paenibacillus odorifer [MKQP]
87444
87521
+
Arg
TCT
[ENA]
¡û
>W1711632782
MPTB01000013
Bacillota
Paenibacillus borealis [MPTB]
40474
40551
+
Arg
TCT
[ENA]
¡û
>W1711632783
MPTB01000013
Bacillota
Paenibacillus borealis [MPTB]
72726
72649
-
Arg
TCT
[ENA]
¡û
>W1711632972
MPTE01000022
Bacillota
Paenibacillus odorifer [MPTE]
85276
85353
+
Arg
TCT
[ENA]
¡û
>W1711633050
MPTF01000021
Bacillota
Paenibacillus odorifer [MPTF]
86171
86248
+
Arg
TCT
[ENA]
¡û
>W1711633113
MPTG01000048
Bacillota
Paenibacillus odorifer [MPTG]
6536
6459
-
Arg
TCT
[ENA]
¡û
>W1711633161
MPTH01000024
Bacillota
Paenibacillus odorifer [MPTH]
84352
84429
+
Arg
TCT
[ENA]
¡û
>W1711633235
MPTI01000025
Bacillota
Paenibacillus odorifer [MPTI]
81643
81720
+
Arg
TCT
[ENA]
¡û
>W1711633295
MPTJ01000022
Bacillota
Paenibacillus odorifer [MPTJ]
87217
87294
+
Arg
TCT
[ENA]
¡û
>W1711633367
MPTK01000027
Bacillota
Paenibacillus odorifer [MPTK]
33030
32953
-
Arg
TCT
[ENA]
¡û
>W1711633407
MPTL01000027
Bacillota
Paenibacillus odorifer [MPTL]
13549
13472
-
Arg
TCT
[ENA]
¡û
>W1711633469
MPTM01000016
Bacillota
Paenibacillus odorifer [MPTM]
88186
88263
+
Arg
TCT
[ENA]
¡û
>W1711633559
MPTN01000051
Bacillota
Paenibacillus odorifer [MPTN]
5894
5817
-
Arg
TCT
[ENA]
¡û
>W1711633614
MPTO01000027
Bacillota
Paenibacillus odorifer [MPTO]
84558
84635
+
Arg
TCT
[ENA]
¡û
>W1711633653
MPTP01000002
Bacillota
Paenibacillus odorifer [MPTP]
432245
432168
-
Arg
TCT
[ENA]
¡û
>W1711633754
MPTQ01000056
Bacillota
Paenibacillus odorifer [MPTQ]
7517
7594
+
Arg
TCT
[ENA]
¡û
>W1711633822
MPTR01000054
Bacillota
Paenibacillus odorifer [MPTR]
15969
15892
-
Arg
TCT
[ENA]
¡û
>W1711633868
MPTS01000023
Bacillota
Paenibacillus odorifer [MPTS]
85522
85599
+
Arg
TCT
[ENA]
¡û
>W1711633883
MPTS01000053
Bacillota
Paenibacillus odorifer [MPTS]
14708
14631
-
Arg
TCT
[ENA]
¡û
>W1711633945
MPTT01000064
Bacillota
Paenibacillus odorifer [MPTT]
7843
7920
+
Arg
TCT
[ENA]
¡û
>W1711634012
MPTU01000043
Bacillota
Paenibacillus odorifer [MPTU]
6643
6566
-
Arg
TCT
[ENA]
¡û
>W1711634075
MPTV01000038
Bacillota
Paenibacillus odorifer [MPTV]
33612
33535
-
Arg
TCT
[ENA]
¡û
>W1711634145
MPTW01000015
Bacillota
Paenibacillus odorifer [MPTW]
152867
152944
+
Arg
TCT
[ENA]
¡û
>W1711634147
MPTW01000020
Bacillota
Paenibacillus odorifer [MPTW]
25674
25597
-
Arg
TCT
[ENA]
¡û
>W1711636464
MPVM01000013
Bacillota
Paenibacillus odorifer [MPVM]
23807
23884
+
Arg
TCT
[ENA]
¡û
>W1711636609
MPVO01000004
Bacillota
Paenibacillus odorifer [MPVO]
82181
82258
+
Arg
TCT
[ENA]
¡û
>W1711636700
MPVP01000257
Bacillota
Paenibacillus odorifer [MPVP]
1488
1411
-
Arg
TCT
[ENA]
¡û
>W1711677360
MRTL01000033
Bacillota
Paenibacillus sp. FSL H8-0259 [MRTL]
16742
16665
-
Arg
TCT
[ENA]
¡û
>W1711678002
MRTW01000013
Bacillota
Paenibacillus sp. FSL R7-0333 [MRTW]
804
727
-
Arg
TCT
[ENA]
¡û
>W1711678017
MRTW01000041
Bacillota
Paenibacillus sp. FSL R7-0333 [MRTW]
59094
59171
+
Arg
TCT
[ENA]
¡û
>W1711678062
MRTX01000021
Bacillota
Paenibacillus sp. FSL R7-0337 [MRTX]
41158
41235
+
Arg
TCT
[ENA]
¡û
>W1711678063
MRTX01000021
Bacillota
Paenibacillus sp. FSL R7-0337 [MRTX]
58789
58712
-
Arg
TCT
[ENA]
¡û
>W1711678116
MRTY01000013
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
103484
103409
-
Arg
TCT
[ENA]
¡û
>WENV180503469
OCAM01028594
[OCAM] human gut metagenome; faeces
442
366
-
Arg
TCT
[ENA]
¢þ
>W141072314
ASPS01000024
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
16314
16391
+
Arg
TCT
[ENA]
¡û
>W141072340
ASPS01000049
Bacillota
Paenibacillus sp. FSL R7-269 [ASPS]
82895
82972
+
Arg
TCT
[ENA]
¡û
>W141072549
ASPV01000091
Bacillota
Paenibacillus sp. FSL H8-237 [ASPV]
5687
5610
-
Arg
TCT
[ENA]
¡û
>W141072702
ASPX01000037
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
139570
139647
+
Arg
TCT
[ENA]
¡û
>W141072703
ASPX01000037
Bacillota
Paenibacillus sp. FSL R7-277 [ASPX]
157462
157385
-
Arg
TCT
[ENA]
¡û
>W141073623
ASSG01000703
Bacillota
Paenibacillus graminis RSA19 [ASSG]
196
119
-
Arg
TCT
[ENA]
¡û
>W141251989
CBRA020000045
Bacillota
Paenibacillus sp. P22 [CBRA]
21698
21622
-
Arg
TCT
[ENA]
¡û
>W141263410
CCDG010000022
Bacillota
Paenibacillus camerounensis G4 [CCDG]
19594
19519
-
Arg
TCT
[ENA]
¡û
>W141263436
CCDG010000088
Bacillota
Paenibacillus camerounensis G4 [CCDG]
2940
3015
+
Arg
TCT
[ENA]
¡û
>WENV170700617
LIDZ01015742
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
121914
121837
-
Arg
TCT
[ENA]
¢þ
>C181054833
CP021965
Bacillota
Paenibacillus odorifer CBA7130 [CP021965]
5478681
5478757
+
Arg
TCT
-
¡û
>W1910154898
BIMD01000002
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
42858
42782
-
Arg
TCT
[ENA]
¡û
>W1910155310
BIMM01000011
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
75485
75561
+
Arg
TCT
[ENA]
¡û
>W1910237384
FPLB01000015
Bacillota
Holdemania sp. Marseille-P2844 [FPLB]
125285
125361
+
Arg
TCT
[ENA]
¡û
>W1910891801
NFEZ01000003
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
502379
502455
+
Arg
TCT
[ENA]
¡û
>C151046408
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
6134950
6135027
+
Arg
TCT
[Ensembl]
¡û
>C151046441
CP009241
Bacillota
Paenibacillus sp. FSL H7-0357 [CP009241]
6169080
6169003
-
Arg
TCT
[Ensembl]
¡û
>C151047547
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
6931791
6931868
+
Arg
TCT
[Ensembl]
¡û
>C151047580
CP009280
Bacillota
Paenibacillus sp. FSL P4-0081 [CP009280]
6956927
6956850
-
Arg
TCT
[Ensembl]
¡û
>C151047754
CP009282
Bacillota
Paenibacillus sp. FSL R5-0912 [CP009282]
6293246
6293169
-
Arg
TCT
[Ensembl]
¡û
>C151047840
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
5906793
5906718
-
Arg
TCT
[Ensembl]
¡û
>C151047892
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
5606334
5606411
+
Arg
TCT
[Ensembl]
¡û
>C151047926
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
5627575
5627500
-
Arg
TCT
[Ensembl]
¡û
>C151047976
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
6606930
6607007
+
Arg
TCT
[Ensembl]
¡û
>C151048009
CP009285
Bacillota
Paenibacillus borealis DSM 13188 [CP009285]
6629381
6629304
-
Arg
TCT
[Ensembl]
¡û
>C151048148
CP009287
Bacillota
Paenibacillus graminis DSM 15220 [CP009287]
5761639
5761716
+
Arg
TCT
[Ensembl]
¡û
>C151050844
CP009428
Bacillota
Paenibacillus odorifer DSM 15391 [CP009428]
5504587
5504664
+
Arg
TCT
[Ensembl]
¡û
>W1510562408
CTED01000470
Bacillota
Paenibacillus ihuae GD6 [CTED]
2660
2583
-
Arg
TCT
[ENA]
¡û
>W1511430170
JUEI01000017
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
19173
19096
-
Arg
TCT
[ENA]
¡û
>W1511430171
JUEI01000017
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
19042
18965
-
Arg
TCT
[ENA]
¡û
>W1511430199
JUEI01000162
Bacillota
Paenibacillus sp. IHB B 3415 [JUEI]
3786
3709
-
Arg
TCT
[ENA]
¡û
>W1511541221
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
2034824
2034900
+
Arg
TCT
[ENA]
¡û
>W1610632603
LIPY01000111
Bacillota
Paenibacillus jilunlii [LIPY]
23485
23562
+
Arg
TCT
[ENA]
¡û
>W1610871146
LRAC01000136
Bacillota
Paenibacillus sp. DMB5 [LRAC]
3876
3951
+
Arg
TCT
[ENA]
¡û
>W1611057195
MAQW01000030
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
307410
307487
+
Arg
TCT
[ENA]
¡û
>W1611057196
MAQW01000030
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
352464
352387
-
Arg
TCT
[ENA]
¡û
>W1710518258
FNDX01000013
Bacillota
Paenibacillus typhae [FNDX]
37269
37344
+
Arg
TCT
[ENA]
¡û
>W1710518259
FNDX01000013
Bacillota
Paenibacillus typhae [FNDX]
58427
58352
-
Arg
TCT
[ENA]
¡û
>W1710521575
FNGM01000011
Bacillota
Paenibacillus jilunlii [FNGM]
121059
121136
+
Arg
TCT
[ENA]
¡û
>W1710554403
FOIK01000004
Bacillota
Paenibacillus sp. NFR01 [FOIK]
65593
65670
+
Arg
TCT
[ENA]
¡û
>W1710554420
FOIK01000004
Bacillota
Paenibacillus sp. NFR01 [FOIK]
92598
92521
-
Arg
TCT
[ENA]
¡û
>W1710595415
FTLY01000001
Bacillota
Paenibacillus sp. RU4X [FTLY]
555396
555320
-
Arg
TCT
[ENA]
¡û
>W1710597313
FTND01000001
Bacillota
Paenibacillus sp. RU4T [FTND]
555396
555320
-
Arg
TCT
[ENA]
¡û
>W1710766989
LIPY01000111
Bacillota
Paenibacillus jilunlii [LIPY]
23485
23562
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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