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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180807 (5 seq.)
>WENV181371006
OFQU01006382
[OFQU] wastewater metagenome; Exp Tend CN 90WW
1066
984
-
Leu
TAA
[ENA]
¡û
>WENV181371188
OFQV01000001
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
141861
141779
-
Leu
TAA
[ENA]
¡û
>WENV181378281
OFRB01000042
[OFRB] wastewater metagenome; Exp Tend CN 0WW
17133
17051
-
Leu
TAA
[ENA]
¡û
>WENV181378701
OFRC01000002
[OFRC] wastewater metagenome; Exp Tend CN 10WW
26689
26771
+
Leu
TAA
[ENA]
¡û
>WENV181381470
OFRF01000001
[OFRF] wastewater metagenome; Exp Tend CN 50WW
158993
158911
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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