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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180815 (40 seq.)
>W131180743
ARNJ01000041
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
35713
35795
+
Leu
GAG
[ENA]
¡û
>W131215983
ATVL01000009
Bacteroidota
Hymenobacter norwichensis DSM 15439 [ATVL]
190275
190357
+
Leu
GAG
[ENA]
¡û
>W1711377543
MDZA01000048
Bacteroidota
Hymenobacter coccineus CCM 8649 [MDZA]
8415
8497
+
Leu
GAG
[ENA]
¡û
>W1711377603
MDZB01000108
Bacteroidota
Hymenobacter lapidarius CCM 8643 [MDZB]
28632
28550
-
Leu
GAG
[ENA]
¡û
>W1711377631
MDZC01000045
Bacteroidota
Hymenobacter glacialis CCM 8648 [MDZC]
24250
24168
-
Leu
GAG
[ENA]
¡û
>W1712105587
NIRR01000027
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
55861
55779
-
Leu
GAG
[ENA]
¡û
>WENV170990742
MWWA01037519
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
644
562
-
Leu
GAG
[ENA]
¢þ
>WENV170994171
MWWD01024642
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
395
313
-
Leu
GAG
[ENA]
¢þ
>WENV170998730
MWWJ01091621
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
165
83
-
Leu
GAG
[ENA]
¢þ
>WENV170999137
MWWJ01245615
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
113
195
+
Leu
GAG
[ENA]
¢þ
>C181175115
CP029145
Bacteroidota
Hymenobacter nivis NBRC 111535 [CP029145]
1799848
1799766
-
Leu
GAG
-
¡û
>W141734722
JNLX01000137
Bacteroidota
Hymenobacter sp. IS2118 [JNLX]
3782
3864
+
Leu
GAG
[ENA]
¡û
>W1910547404
FZNS01000004
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
311683
311601
-
Leu
GAG
[ENA]
¡û
>W1910651882
LYMU01000010
Bacteroidota
Hymenobacter sp. UV11 [LYMU]
77768
77686
-
Leu
GAG
[ENA]
¡û
>W1911788160
QYCN01000017
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
61546
61628
+
Leu
GAG
[ENA]
¡û
>W1810089882
PGFA01000001
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
2781069
2780987
-
Leu
GAG
[ENA]
¡û
>W1810173094
PJMU01000003
Bacteroidota
Pontibacter ramchanderi LP43 [PJMU]
337225
337143
-
Leu
GAG
[ENA]
¡û
>W1810572882
QEKI01000014
Bacteroidota
Pontibacter virosus DSM 100231 [QEKI]
104490
104408
-
Leu
GAG
[ENA]
¡û
>W1810678966
QKNS01000003
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
429433
429515
+
Leu
GAG
[ENA]
¡û
>W1810701259
QMDV01000003
Bacteroidota
Pontibacter arcticus 2b14 [QMDV]
655976
656058
+
Leu
GAG
[ENA]
¡û
>W1810789486
QRGR01000007
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
225433
225515
+
Leu
GAG
[ENA]
¡û
>W1810912391
QVLT01000021
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
10862
10780
-
Leu
GAG
[ENA]
¡û
>SRA1015608
SRR023846.131183
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
76
158
+
Leu
GAG
[SRA]
>C151009418
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
3698099
3698181
+
Leu
GAG
[Ensembl]
¡û
>C151017355
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
1849533
1849615
+
Leu
GAG
[Ensembl]
¡û
>C151064007
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
2727007
2726925
-
Leu
GAG
[Ensembl]
¡û
>C151096200
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
1102881
1102963
+
Leu
GAG
-
¡û
>W1511582936
LATM01000002
Bacteroidota
Hymenobacter terrenus MIMtkLc17 [LATM]
378537
378455
-
Leu
GAG
[ENA]
¡û
>C161061561
CP013909
Bacteroidota
Hymenobacter sedentarius DG5B [CP013909]
4593018
4593100
+
Leu
GAG
[Ensembl]
¡û
>C161070741
CP014304
Bacteroidota
Hymenobacter sp. PAMC 26628 [CP014304]
3030168
3030086
-
Leu
GAG
[Ensembl]
¡û
>C161076988
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
3285244
3285326
+
Leu
GAG
-
¡û
>W1710530537
FNOV01000001
Bacteroidota
Hymenobacter psychrophilus [FNOV]
264244
264326
+
Leu
GAG
[ENA]
¡û
>W1710553567
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
1328872
1328954
+
Leu
GAG
[ENA]
¡û
>W1710573743
FOXS01000003
Bacteroidota
Hymenobacter arizonensis [FOXS]
391718
391636
-
Leu
GAG
[ENA]
¡û
>W1710579025
FPCA01000012
Bacteroidota
Pontibacter akesuensis [FPCA]
2673
2755
+
Leu
GAG
[ENA]
¡û
>W1710587464
FQYN01000003
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
340481
340399
-
Leu
GAG
[ENA]
¡û
>W1710590111
FRAS01000009
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
18143
18061
-
Leu
GAG
[ENA]
¡û
>W1710597886
FTNM01000003
Bacteroidota
Pontibacter lucknowensis [FTNM]
369035
369117
+
Leu
GAG
[ENA]
¡û
>W1710600035
FTPP01000003
Bacteroidota
Pontibacter indicus [FTPP]
38024
37942
-
Leu
GAG
[ENA]
¡û
>W1710610147
FYEW01000001
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
369043
369125
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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