This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180868 (7 seq.)
>W1711135041
LUYM01000016
Actinomycetota
Actinomycetales bacterium Actino_02 [LUYM]
191427
191342
-
Leu
CAA
[ENA]
¡û
>WENV181187951
OEOE01004945
[OEOE] activated sludge metagenome; Activated Sludge
1188
1271
+
Leu
CAA
[ENA]
¡û
>WENV181189459
OEOF01051562
[OEOF] activated sludge metagenome; Activated Sludge
307
223
-
Leu
CAA
[ENA]
¡û
>WENV181395528
OFSA01001620
[OFSA] freshwater metagenome; Freshwater Lake
584
667
+
Leu
CAA
[ENA]
¡û
>W141246633
CANF01000478
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
71
154
+
Leu
CAA
[ENA]
¡û
>W1810057991
PDJC01000001
Actinomycetota
Propionicimonas paludicola DSM 15597 [PDJC]
1623039
1623122
+
Leu
CAA
[ENA]
¡û
>W1610946161
LUYM01000016
Actinomycetota
Actinomycetales bacterium Actino_02 [LUYM]
191427
191342
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK