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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180913 (20 seq.)
>W1711751058
MUNJ01000008
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
54690
54614
-
Val
GAC
[ENA]
¡û
>W131157108
AQQO01000339
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
15444
15368
-
Val
GAC
[ENA]
¡û
>W131157109
AQQO01000339
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
15337
15261
-
Val
GAC
[ENA]
¡û
>C020709
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
2489184
2489108
-
Val
GAC
[Ensembl]
¡û
>C020710
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
2489069
2488993
-
Val
GAC
[Ensembl]
¡û
>w026347
ABAU01000112
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
499
421
-
Val
GAC
[ENA]
¡û
>C08008732
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
2753349
2753425
+
Val
GAC
[Ensembl]
¡û
>C08008733
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
2753473
2753549
+
Val
GAC
[Ensembl]
¡û
>WENV183780864
PPYF01188072
[PPYF] human gut metagenome; stool from patient with Crohn's disease
15736
15660
-
Val
GAC
[ENA]
¢þ
>WENV183780865
PPYF01188072
[PPYF] human gut metagenome; stool from patient with Crohn's disease
15629
15553
-
Val
GAC
[ENA]
¢þ
>C181160507
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
636185
636261
+
Val
GAC
-
¡û
>C181160508
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
636292
636368
+
Val
GAC
-
¡û
>W1810423078
PYSI01000007
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
61622
61698
+
Val
GAC
[ENA]
¡û
>W1810423079
PYSI01000007
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
61794
61870
+
Val
GAC
[ENA]
¡û
>W1511347969
JRKB01000061
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
66856
66932
+
Val
GAC
[ENA]
¡û
>W1511347970
JRKB01000061
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
66963
67039
+
Val
GAC
[ENA]
¡û
>W1511478834
JWHQ01000003
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
115617
115541
-
Val
GAC
[ENA]
¡û
>W1511478835
JWHQ01000003
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
115510
115434
-
Val
GAC
[ENA]
¡û
>C161109407
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
1727037
1726961
-
Val
GAC
[Ensembl]
¡û
>C161109408
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
1726930
1726854
-
Val
GAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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