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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181132 (7 seq.)
>WENV183680507
ORMF010191449
[ORMF] groundwater metagenome; groundwater
120520
120444
-
Arg
TCT
[ENA]
¡û
>W1910744566
MIBX01000122
Campylobacterota
Sulfurimonas sp. RIFCSPHIGHO2_12_FULL_36_9 [MIBX]
25394
25318
-
Arg
TCT
[ENA]
¡û
>W1910744607
MIBZ01000026
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
99354
99430
+
Arg
TCT
[ENA]
¡û
>W1910744662
MICB01000015
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_36_74 [MICB]
242
166
-
Arg
TCT
[ENA]
¡û
>W2010877998
MIBX01000122
Campylobacterota
Sulfurimonas sp. RIFCSPHIGHO2_12_FULL_36_9 [MIBX]
25394
25318
-
Arg
TCT
[ENA]
¡û
>W2010878039
MIBZ01000026
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_36_12 [MIBZ]
99354
99430
+
Arg
TCT
[ENA]
¡û
>W2010878094
MICB01000015
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_36_74 [MICB]
242
166
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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