This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181193 (125 seq.)
>W1710785734
LJIC01000119
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
40664
40580
-
Leu
GAG
[ENA]
¡û
>W1710854928
LLXX01000038
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
17499
17583
+
Leu
GAG
[ENA]
¡û
>W1710854998
LLXY01000190
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
54089
54173
+
Leu
GAG
[ENA]
¡û
>W1710892769
LNEC01000016
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
153753
153669
-
Leu
GAG
[ENA]
¡û
>W1711501133
MKRG01000039
Alphaproteobacteria
Afipia sp. 62-7 [MKRG]
39165
39081
-
Leu
GAG
[ENA]
¡û
>W1711504269
MKUJ01000018
Alphaproteobacteria
Afipia sp. 64-13 [MKUJ]
67336
67420
+
Leu
GAG
[ENA]
¡û
>W1711505885
MKVX01000018
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
1317226
1317142
-
Leu
GAG
[ENA]
¡û
>W1711783517
MVOD01000016
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
195825
195741
-
Leu
GAG
[ENA]
¡û
>W1711928305
NAEX01000180
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
167959
168043
+
Leu
GAG
[ENA]
¡û
>W1711928351
NAEY01000164
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
89450
89366
-
Leu
GAG
[ENA]
¡û
>W1711928405
NAEZ01000181
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
344931
344847
-
Leu
GAG
[ENA]
¡û
>W1711928437
NAFA01000196
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
135325
135241
-
Leu
GAG
[ENA]
¡û
>W1711928496
NAFB01000189
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
15869
15785
-
Leu
GAG
[ENA]
¡û
>W1711928536
NAFC01000172
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
144434
144518
+
Leu
GAG
[ENA]
¡û
>W1711928589
NAFD01000190
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
226233
226317
+
Leu
GAG
[ENA]
¡û
>W1711928621
NAFE01000217
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
164724
164808
+
Leu
GAG
[ENA]
¡û
>W1711928677
NAFF01000108
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
164724
164808
+
Leu
GAG
[ENA]
¡û
>W1711928719
NAFG01000174
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
164724
164808
+
Leu
GAG
[ENA]
¡û
>W1711928767
NAFH01000169
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
164724
164808
+
Leu
GAG
[ENA]
¡û
>W1711928827
NAFI01000183
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
226235
226319
+
Leu
GAG
[ENA]
¡û
>W1711928856
NAFJ01000139
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
74081
73997
-
Leu
GAG
[ENA]
¡û
>W1711928903
NAFK01000159
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
95542
95458
-
Leu
GAG
[ENA]
¡û
>W1711928973
NAFL01000286
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
283062
283146
+
Leu
GAG
[ENA]
¡û
>C171064674
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
4832043
4832127
+
Leu
GAG
-
¡û
>W131167475
ARDH01000016
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
76988
76904
-
Leu
GAG
[ENA]
¡û
>W131226887
AUES01000011
Alphaproteobacteria
Bradyrhizobium sp. URHA0002 [AUES]
92005
92089
+
Leu
GAG
[ENA]
¡û
>W131227250
AUEZ01000085
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
2568
2484
-
Leu
GAG
[ENA]
¡û
>W131237391
AUOJ01000010
Alphaproteobacteria
Bradyrhizobium sp. JGI 0001002-A22 [AUOJ]
218
302
+
Leu
GAG
[ENA]
¡û
>C018914
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
3703113
3703029
-
Leu
GAG
[Ensembl]
¡û
>C018956
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
3428050
3427966
-
Leu
GAG
[Ensembl]
¡û
>C019007
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
3574740
3574656
-
Leu
GAG
[Ensembl]
¡û
>C019038
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
2726839
2726923
+
Leu
GAG
[Ensembl]
¡û
>W141007523
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
359593
359677
+
Leu
GAG
[ENA]
¡û
>WENV180309168
OBJR01632839
[OBJR] soil metagenome; soil
173
89
-
Leu
GAG
[ENA]
¢þ
>WENV180344852
OBLL01266239
[OBLL] soil metagenome; soil
80
164
+
Leu
GAG
[ENA]
¢þ
>w001292
AAAF01000011
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
83474
83393
-
Leu
GAG
[ENA]
¡û
>WENV181164406
OEIR01149288
[OEIR] soil metagenome; soil
118
202
+
Leu
GAG
[ENA]
¢þ
>WENV181166356
OEIU01000127
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
52590
52506
-
Leu
GAG
[ENA]
¢þ
>WENV181167008
OEIU01006261
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
619
703
+
Leu
GAG
[ENA]
¢þ
>W141150257
AXAG01000003
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
404702
404786
+
Leu
GAG
[ENA]
¡û
>W141150713
AXAP01000014
Alphaproteobacteria
Bradyrhizobium elkanii WSM2783 [AXAP]
81946
81862
-
Leu
GAG
[ENA]
¡û
>W141151141
AXAV01000011
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
107950
107866
-
Leu
GAG
[ENA]
¡û
>W141151306
AXAY01000033
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
94280
94196
-
Leu
GAG
[ENA]
¡û
>W141169221
AXVP01000144
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
11237
11321
+
Leu
GAG
[ENA]
¡û
>W141220438
AZXU01000003
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
355115
355031
-
Leu
GAG
[ENA]
¡û
>W141223327
BADD01000636
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
398
314
-
Leu
GAG
[ENA]
¡û
>W141261715
CCAZ010000082
Alphaproteobacteria
Afipia felis [CCAZ]
2808
2892
+
Leu
GAG
[ENA]
¡û
>W141275963
JADK01000008
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
126093
126009
-
Leu
GAG
[ENA]
¡û
>WENV183668394
ORJL010736609
[ORJL] groundwater metagenome; groundwater
1450
1366
-
Leu
GAG
[ENA]
¢þ
>WENV183724303
PJQE01005820
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
5
89
+
Leu
GAG
[ENA]
¢þ
>WENV170576900
FRDC01002086
[FRDC] freshwater metagenome; water
107916
107832
-
Leu
GAG
[ENA]
¢þ
>WENV170662374
JXWW01050393
[JXWW] soil metagenome; rice field; organic GM Plot
85
1
-
Leu
GAG
[ENA]
¢þ
>WENV170706139
LNAP01001317
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4194
4110
-
Leu
GAG
[ENA]
¢þ
>WENV170706730
LNAP01005918
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10689
10605
-
Leu
GAG
[ENA]
¢þ
>WENV170707179
LNAP01014498
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5558
5474
-
Leu
GAG
[ENA]
¢þ
>WENV170707636
LNAP01028063
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2976
3057
+
Leu
GAG
[ENA]
¢þ
>WENV170709699
LNFM01000600
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
85763
85847
+
Leu
GAG
[ENA]
¢þ
>WENV170709777
LNFM01000691
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
25403
25487
+
Leu
GAG
[ENA]
¢þ
>WENV170709796
LNFM01000723
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
153667
153583
-
Leu
GAG
[ENA]
¢þ
>C181041873
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
3487869
3487785
-
Leu
GAG
-
¡û
>C181041919
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
3528248
3528164
-
Leu
GAG
-
¡û
>C181178212
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
3940422
3940338
-
Leu
GAG
-
¡û
>C181178258
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
3752074
3751990
-
Leu
GAG
-
¡û
>C191186662
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
3012545
3012461
-
Leu
GAG
-
¡û
>W09103850
AAKZ01000019
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
20816
20732
-
Leu
GAG
[ENA]
¡û
>W09104372
AALQ01000003
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
821734
821650
-
Leu
GAG
[ENA]
¡û
>W09104419
AALR01000008
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
84023
84107
+
Leu
GAG
[ENA]
¡û
>W09107576
ABJR01000001
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
1811444
1811360
-
Leu
GAG
[ENA]
¡û
>W1910183070
BJNK01000005
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
264219
264135
-
Leu
GAG
[ENA]
¡û
>W1911219130
NRSI01000001
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
16641
16725
+
Leu
GAG
[ENA]
¡û
>W1911629492
PSRR01000020
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
17368
17452
+
Leu
GAG
[ENA]
¡û
>W1911629549
PSRS01000061
Alphaproteobacteria
Bradyrhizobium sp. Leo121 [PSRS]
3580
3664
+
Leu
GAG
[ENA]
¡û
>W1911760579
QWVU01000043
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
54319
54403
+
Leu
GAG
[ENA]
¡û
>W1911809172
QYYC01000035
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
65598
65682
+
Leu
GAG
[ENA]
¡û
>W1911809204
QYYD01000001
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
218513
218597
+
Leu
GAG
[ENA]
¡û
>W1810089269
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
2466288
2466372
+
Leu
GAG
[ENA]
¡û
>W1810089657
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
2437621
2437537
-
Leu
GAG
[ENA]
¡û
>SRA1002905
SRR002326.93741
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
60
144
+
Leu
GAG
[SRA]
>W1810289857
PTFE01000013
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
31556
31640
+
Leu
GAG
[ENA]
¡û
>W1810395553
PYCM01000672
Alphaproteobacteria
Bradyrhizobium algeriense RST89 [PYCM]
9548
9464
-
Leu
GAG
[ENA]
¡û
>W1810395611
PYCN01000011
Alphaproteobacteria
Bradyrhizobium algeriense RST91 [PYCN]
208607
208691
+
Leu
GAG
[ENA]
¡û
>W1810400174
PYFW01000013
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
34178
34094
-
Leu
GAG
[ENA]
¡û
>W1810400208
PYFX01000006
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
182052
181968
-
Leu
GAG
[ENA]
¡û
>W1810679429
QKQS01000013
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
464842
464758
-
Leu
GAG
[ENA]
¡û
>W1810787511
QRDT01000012
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
129309
129225
-
Leu
GAG
[ENA]
¡û
>W1810884408
QUMP01000012
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
129309
129225
-
Leu
GAG
[ENA]
¡û
>C151066538
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
4635412
4635496
+
Leu
GAG
[Ensembl]
¡û
>SRA1046450
SRR035093.309424
454 Sequencing (SRP001814)
455
371
-
Leu
GAG
[SRA]
>W10112810
ADFI01000004
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
220130
220046
-
Leu
GAG
[ENA]
¡û
>W10119586
ADVZ01000005
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
275157
275073
-
Leu
GAG
[ENA]
¡û
>C10110768
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
3826909
3826825
-
Leu
GAG
[Ensembl]
¡û
>W1510973725
JGCL01000005
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
215175
215259
+
Leu
GAG
[ENA]
¡û
>W11116037
ADFI01000004
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
220130
220046
-
Leu
GAG
[ENA]
¡û
>C11118750
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
2428378
2428462
+
Leu
GAG
[Ensembl]
¡û
>W1511353643
JRPN01000028
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
151176
151260
+
Leu
GAG
[ENA]
¡û
>W11125852
ADVZ01000005
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
275157
275073
-
Leu
GAG
[ENA]
¡û
>W1511517248
JXXE01000099
Alphaproteobacteria
Rhodopseudomonas palustris BAL398 [JXXE]
7303
7387
+
Leu
GAG
[ENA]
¡û
>W1511533272
JYMR01000020
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
20635
20551
-
Leu
GAG
[ENA]
¡û
>W1511533338
JYMS01000049
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
187271
187187
-
Leu
GAG
[ENA]
¡û
>W1511533346
JYMT01000011
Alphaproteobacteria
Bradyrhizobium sp. LTSP885 [JYMT]
91701
91785
+
Leu
GAG
[ENA]
¡û
>W1511533398
JYMU01000006
Alphaproteobacteria
Bradyrhizobium sp. LTSPM299 [JYMU]
6120
6036
-
Leu
GAG
[ENA]
¡û
>W1511625949
LCZM01000218
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
77380
77296
-
Leu
GAG
[ENA]
¡û
>C121000468
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
4612326
4612410
+
Leu
GAG
[Ensembl]
¡û
>C121000720
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
3120868
3120952
+
Leu
GAG
[Ensembl]
¡û
>C161017376
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
1602937
1603021
+
Leu
GAG
[Ensembl]
¡û
>C161107842
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
6511951
6512035
+
Leu
GAG
-
¡û
>C161107924
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
4315984
4316068
+
Leu
GAG
-
¡û
>W121036210
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
5009259
5009175
-
Leu
GAG
[ENA]
¡û
>W121036454
AHMB01000068
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
49744
49828
+
Leu
GAG
[ENA]
¡û
>W121065320
AJPX01000687
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
27187
27103
-
Leu
GAG
[ENA]
¡û
>W121065344
AJPY01000284
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
8597
8681
+
Leu
GAG
[ENA]
¡û
>W121065386
AJPZ01000199
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
5248
5332
+
Leu
GAG
[ENA]
¡û
>W121065455
AJQA01000323
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
8295
8379
+
Leu
GAG
[ENA]
¡û
>W121065506
AJQB01000709
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
2827
2743
-
Leu
GAG
[ENA]
¡û
>C131000808
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
3556674
3556758
+
Leu
GAG
[Ensembl]
¡û
>W1610514608
FMAI01000007
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
77101
77017
-
Leu
GAG
[ENA]
¡û
>W1610649540
LJIC01000119
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
40664
40580
-
Leu
GAG
[ENA]
¡û
>W1610717269
LLXX01000038
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
17499
17583
+
Leu
GAG
[ENA]
¡û
>W1610717339
LLXY01000190
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
54089
54173
+
Leu
GAG
[ENA]
¡û
>W1610753035
LNEC01000016
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
153753
153669
-
Leu
GAG
[ENA]
¡û
>W1710500298
FMAI01000007
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
77101
77017
-
Leu
GAG
[ENA]
¡û
>W1710536654
FNTI01000001
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
186994
186910
-
Leu
GAG
[ENA]
¡û
>W1710546022
FOBX01000010
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
203512
203428
-
Leu
GAG
[ENA]
¡û
>W1710548424
FODT01000008
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
52511
52427
-
Leu
GAG
[ENA]
¡û
>W1710594252
FSRD01000001
Alphaproteobacteria
Bradyrhizobium erythrophlei [FSRD]
6737007
6737091
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK