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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181635 (63 seq.)
>W1710991005
LPXI01000037
Bacteroidota
Myroides marinus [LPXI]
414
330
-
Leu
TAG
[ENA]
¡û
>W1710991062
LPXI01000082
Bacteroidota
Myroides marinus [LPXI]
150145
150061
-
Leu
TAG
[ENA]
¡û
>W1711005733
LQNU01000043
Bacteroidota
Myroides marinus [LQNU]
694
610
-
Leu
TAG
[ENA]
¡û
>W1711005754
LQNU01000058
Bacteroidota
Myroides marinus [LQNU]
87837
87753
-
Leu
TAG
[ENA]
¡û
>W131002832
AGZL01000029
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
44946
45030
+
Leu
TAG
[ENA]
¡û
>W131002833
AGZL01000029
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
45214
45296
+
Leu
TAG
[ENA]
¡û
>W131229104
AUGN01000003
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
104328
104244
-
Leu
TAG
[ENA]
¡û
>C171067431
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
1578511
1578595
+
Leu
TAG
-
¡û
>C171067432
CP017769
Bacteroidota
Myroides sp. ZB35 [CP017769]
1578777
1578859
+
Leu
TAG
-
¡û
>w023482
AAXX01000001
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
861184
861103
-
Leu
TAG
[ENA]
¡û
>WENV180039376
LLBY010060340
[LLBY] soil metagenome; soil from tomato rhizosphere
804
722
-
Leu
TAG
[ENA]
¢þ
>W141008166
AGZK01000034
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
11607
11691
+
Leu
TAG
[ENA]
¡û
>W141008167
AGZK01000034
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
11875
11957
+
Leu
TAG
[ENA]
¡û
>WENV180208710
OBAJ01023306
[OBAJ] marine metagenome; Coastal water
122
204
+
Leu
TAG
[ENA]
¢þ
>WENV181836029
OGVJ01000114
[OGVJ] freshwater metagenome; freshwater
4164
4082
-
Leu
TAG
[ENA]
¢þ
>WENV181843859
OGVV01000252
[OGVV] freshwater metagenome; freshwater
1383
1465
+
Leu
TAG
[ENA]
¢þ
>W141188495
AYMS01000060
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
70443
70527
+
Leu
TAG
[ENA]
¡û
>W141188508
AYMS01000169
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
232
150
-
Leu
TAG
[ENA]
¡û
>WENV182563974
OJED01010067
[OJED] seawater metagenome; Sea water
204
122
-
Leu
TAG
[ENA]
¢þ
>WENV170230053
CEQG01275941
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5798
5880
+
Leu
TAG
[ENA]
¢þ
>WENV170246560
CEQP01248516
[CEQP] marine metagenome genome assembly TARA_076_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
35
117
+
Leu
TAG
[ENA]
¢þ
>C191153011
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
1506750
1506832
+
Leu
TAG
-
¡û
>C191153012
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
1507018
1507100
+
Leu
TAG
-
¡û
>W141702894
JMLU01000006
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
116935
116853
-
Leu
TAG
[ENA]
¡û
>W1911243239
NSGJ01000013
Bacteroidota
Myroides sp. N17-2 [NSGJ]
33151
33233
+
Leu
TAG
[ENA]
¡û
>W1911243240
NSGJ01000013
Bacteroidota
Myroides sp. N17-2 [NSGJ]
33899
33981
+
Leu
TAG
[ENA]
¡û
>W1911587314
PJQW01000018
Bacteroidota
Flavobacterium sp. J27 [PJQW]
17135
17053
-
Leu
TAG
[ENA]
¡û
>W1810694875
QLMI01000006
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
162242
162160
-
Leu
TAG
[ENA]
¡û
>W1810695872
QLSV01000002
Bacteroidota
Flavobacterium lacus CGMCC 1.12504 [QLSV]
153673
153755
+
Leu
TAG
[ENA]
¡û
>C151066948
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
1644612
1644696
+
Leu
TAG
[Ensembl]
¡û
>C151066949
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
1644880
1644962
+
Leu
TAG
[Ensembl]
¡û
>C151072849
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
394671
394755
+
Leu
TAG
[Ensembl]
¡û
>C151072850
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
394939
395021
+
Leu
TAG
[Ensembl]
¡û
>W1511481051
JWJO01000008
Bacteroidota
Myroides marinus L41 [JWJO]
15445
15529
+
Leu
TAG
[ENA]
¡û
>W1511481112
JWJO01000077
Bacteroidota
Myroides marinus L41 [JWJO]
683
599
-
Leu
TAG
[ENA]
¡û
>W1511526836
JYGZ01000003
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
424441
424523
+
Leu
TAG
[ENA]
¡û
>C161059422
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
1597454
1597538
+
Leu
TAG
[Ensembl]
¡û
>C161059423
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
1597722
1597804
+
Leu
TAG
[Ensembl]
¡û
>W1610061468
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
263208
263124
-
Leu
TAG
[ENA]
¡û
>W1610061469
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
262940
262856
-
Leu
TAG
[ENA]
¡û
>W1610061470
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
262672
262590
-
Leu
TAG
[ENA]
¡û
>W121009087
AGEC01000004
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
85302
85218
-
Leu
TAG
[ENA]
¡û
>W121009088
AGEC01000004
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
85034
84952
-
Leu
TAG
[ENA]
¡û
>W121009153
AGED01000007
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
12972
13056
+
Leu
TAG
[ENA]
¡û
>W121009154
AGED01000007
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
13240
13322
+
Leu
TAG
[ENA]
¡û
>W121009223
AGEE01000005
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
18663
18747
+
Leu
TAG
[ENA]
¡û
>W121009224
AGEE01000005
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
19750
19832
+
Leu
TAG
[ENA]
¡û
>W121124139
BAEX01000091
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
45
129
+
Leu
TAG
[ENA]
¡û
>W1610845677
LPXI01000037
Bacteroidota
Myroides marinus [LPXI]
414
330
-
Leu
TAG
[ENA]
¡û
>W1610845734
LPXI01000082
Bacteroidota
Myroides marinus [LPXI]
150145
150061
-
Leu
TAG
[ENA]
¡û
>W1610856383
LQNU01000043
Bacteroidota
Myroides marinus [LQNU]
694
610
-
Leu
TAG
[ENA]
¡û
>W1610856404
LQNU01000058
Bacteroidota
Myroides marinus [LQNU]
87837
87753
-
Leu
TAG
[ENA]
¡û
>W1710059133
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
263208
263124
-
Leu
TAG
[ENA]
¡û
>W1710059134
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
262940
262856
-
Leu
TAG
[ENA]
¡û
>W1710059135
BCMQ01000001
Bacteroidota
Myroides odoratimimus [BCMQ]
262672
262590
-
Leu
TAG
[ENA]
¡û
>W1710517916
FNDQ01000037
Bacteroidota
Myroides phaeus [FNDQ]
374
290
-
Leu
TAG
[ENA]
¡û
>W1710541928
FNYS01000034
Bacteroidota
Myroides marinus [FNYS]
15424
15508
+
Leu
TAG
[ENA]
¡û
>W1710541930
FNYS01000038
Bacteroidota
Myroides marinus [FNYS]
11528
11612
+
Leu
TAG
[ENA]
¡û
>W1710551252
FOFY01000001
Bacteroidota
Myroides profundi [FOFY]
135724
135640
-
Leu
TAG
[ENA]
¡û
>W1710551253
FOFY01000001
Bacteroidota
Myroides profundi [FOFY]
135456
135374
-
Leu
TAG
[ENA]
¡û
>W1710591225
FRBO01000008
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
246297
246215
-
Leu
TAG
[ENA]
¡û
>W1710591261
FRBO01000021
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
1027
943
-
Leu
TAG
[ENA]
¡û
>W1710593800
FRYK01000001
Bacteroidota
Flavobacterium cucumis [FRYK]
1124544
1124626
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK