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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181664 (43 seq.)
>W131108941
APGP01000044
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
59590
59506
-
Tyr
GTA
[ENA]
¡û
>W131218300
ATXO01000007
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
43613
43529
-
Tyr
GTA
[ENA]
¡û
>C006890
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
605560
605644
+
Tyr
GTA
[Ensembl]
¡û
>WENV180014264
FPIC01124746
[FPIC] soil metagenome; Soil
230
314
+
Tyr
GTA
[ENA]
¢þ
>WENV181226091
OFDK01000031
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
51998
52082
+
Tyr
GTA
[ENA]
¢þ
>WENV181285366
OFGS01000054
[OFGS] hot springs metagenome; Water and soil
14440
14524
+
Tyr
GTA
[ENA]
¢þ
>WENV181408499
OGCH01004143
[OGCH] hot springs metagenome; hot springs
2197
2281
+
Tyr
GTA
[ENA]
¢þ
>W09113831
ABYZ01000014
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
26630
26546
-
Tyr
GTA
[ENA]
¡û
>C191131118
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2539098
2539014
-
Tyr
GTA
-
¡û
>C09100838
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2735471
2735387
-
Tyr
GTA
[Ensembl]
¡û
>W1911155341
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2890453
2890369
-
Tyr
GTA
[ENA]
¡û
>W1911244020
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1578920
1579004
+
Tyr
GTA
[ENA]
¡û
>W1911244081
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2443539
2443455
-
Tyr
GTA
[ENA]
¡û
>W1911244151
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
85525
85441
-
Tyr
GTA
[ENA]
¡û
>W1911244158
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
131547
131631
+
Tyr
GTA
[ENA]
¡û
>W1911244226
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2908235
2908151
-
Tyr
GTA
[ENA]
¡û
>W1911572521
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
40590
40674
+
Tyr
GTA
[ENA]
¡û
>W1911572604
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
783097
783013
-
Tyr
GTA
[ENA]
¡û
>W1911572616
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
126424
126508
+
Tyr
GTA
[ENA]
¡û
>W1810052255
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
2498930
2499014
+
Tyr
GTA
[ENA]
¡û
>W1810071874
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
80543
80627
+
Tyr
GTA
[ENA]
¡û
>W1810071923
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1113068
1113152
+
Tyr
GTA
[ENA]
¡û
>W1810072006
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
708468
708384
-
Tyr
GTA
[ENA]
¡û
>W1810368031
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
571639
571555
-
Tyr
GTA
[ENA]
¡û
>C10103654
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2382696
2382612
-
Tyr
GTA
[Ensembl]
¡û
>C11105193
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
285277
285361
+
Tyr
GTA
[Ensembl]
¡û
>C11105369
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
94915
94999
+
Tyr
GTA
[Ensembl]
¡û
>C11105418
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
358114
358198
+
Tyr
GTA
[Ensembl]
¡û
>C11105478
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
2377168
2377084
-
Tyr
GTA
[Ensembl]
¡û
>C11105860
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
2317083
2316999
-
Tyr
GTA
[Ensembl]
¡û
>W11139401
AEKB01000033
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
1127
1043
-
Tyr
GTA
[ENA]
¡û
>W11139427
AEKC01000019
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
14097
14013
-
Tyr
GTA
[ENA]
¡û
>W11139454
AEKD01000005
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
38674
38758
+
Tyr
GTA
[ENA]
¡û
>W1511563980
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
73079
72995
-
Tyr
GTA
[ENA]
¡û
>W1511563991
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
1261460
1261376
-
Tyr
GTA
[ENA]
¡û
>W1710603726
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
566644
566728
+
Tyr
GTA
[ENA]
¡û
>W1710603824
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1890639
1890555
-
Tyr
GTA
[ENA]
¡û
>W1710603909
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2844108
2844024
-
Tyr
GTA
[ENA]
¡û
>W1710605074
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1900977
1900893
-
Tyr
GTA
[ENA]
¡û
>W1710609648
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
491011
491095
+
Tyr
GTA
[ENA]
¡û
>W1710609732
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
487467
487383
-
Tyr
GTA
[ENA]
¡û
>W1710609782
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
87555
87471
-
Tyr
GTA
[ENA]
¡û
>W1710609828
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
80300
80216
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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