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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181674 (44 seq.)
>W131108932
APGP01000030
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
175464
175380
-
Leu
TAG
[ENA]
¡û
>W131218313
ATXO01000013
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
4738
4654
-
Leu
TAG
[ENA]
¡û
>C006919
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2324377
2324293
-
Leu
TAG
[Ensembl]
¡û
>WENV180013997
FPIC01024188
[FPIC] soil metagenome; Soil
11673
11757
+
Leu
TAG
[ENA]
¢þ
>WENV181226099
OFDK01000036
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
149
65
-
Leu
TAG
[ENA]
¢þ
>WENV181285456
OFGS01000528
[OFGS] hot springs metagenome; Water and soil
3651
3735
+
Leu
TAG
[ENA]
¢þ
>WENV181408650
OGCH01007511
[OGCH] hot springs metagenome; hot springs
2037
2121
+
Leu
TAG
[ENA]
¢þ
>C191131105
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1077375
1077459
+
Leu
TAG
-
¡û
>W09104555
AALW01000063
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
698
614
-
Leu
TAG
[ENA]
¡û
>W09113800
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
233417
233501
+
Leu
TAG
[ENA]
¡û
>C09100855
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1603845
1603761
-
Leu
TAG
[Ensembl]
¡û
>W1911155360
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1784221
1784137
-
Leu
TAG
[ENA]
¡û
>W1911244052
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
941676
941592
-
Leu
TAG
[ENA]
¡û
>W1911244100
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1321163
1321079
-
Leu
TAG
[ENA]
¡û
>W1911244141
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1874128
1874044
-
Leu
TAG
[ENA]
¡û
>W1911244177
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1217014
1217098
+
Leu
TAG
[ENA]
¡û
>W1911244210
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
625968
626052
+
Leu
TAG
[ENA]
¡û
>W1911572540
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1155190
1155274
+
Leu
TAG
[ENA]
¡û
>W1911572594
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2580503
2580419
-
Leu
TAG
[ENA]
¡û
>W1911572635
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1258175
1258259
+
Leu
TAG
[ENA]
¡û
>W1810052245
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
712223
712307
+
Leu
TAG
[ENA]
¡û
>W1810071893
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1201282
1201366
+
Leu
TAG
[ENA]
¡û
>W1810071942
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2219025
2219109
+
Leu
TAG
[ENA]
¡û
>W1810071996
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2506561
2506477
-
Leu
TAG
[ENA]
¡û
>W1810368021
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2369600
2369516
-
Leu
TAG
[ENA]
¡û
>C10103640
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1154992
1155076
+
Leu
TAG
[Ensembl]
¡û
>C11105210
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1249770
1249854
+
Leu
TAG
[Ensembl]
¡û
>C11105402
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1605533
1605449
-
Leu
TAG
[Ensembl]
¡û
>C11105435
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1368081
1368165
+
Leu
TAG
[Ensembl]
¡û
>C11105496
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1002639
1002555
-
Leu
TAG
[Ensembl]
¡û
>C11105877
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1381540
1381456
-
Leu
TAG
[Ensembl]
¡û
>W11139369
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
118676
118592
-
Leu
TAG
[ENA]
¡û
>W11139420
AEKC01000011
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
60250
60334
+
Leu
TAG
[ENA]
¡û
>W11139468
AEKD01000014
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
46972
47056
+
Leu
TAG
[ENA]
¡û
>W1511564006
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
496701
496617
-
Leu
TAG
[ENA]
¡û
>W1511564051
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1192322
1192406
+
Leu
TAG
[ENA]
¡û
>W1710603743
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1699888
1699972
+
Leu
TAG
[ENA]
¡û
>W1710603841
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
757392
757308
-
Leu
TAG
[ENA]
¡û
>W1710603928
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1704228
1704144
-
Leu
TAG
[ENA]
¡û
>W1710605091
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
769351
769267
-
Leu
TAG
[ENA]
¡û
>W1710609665
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1618531
1618615
+
Leu
TAG
[ENA]
¡û
>W1710609703
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1019682
1019766
+
Leu
TAG
[ENA]
¡û
>W1710609772
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1875783
1875699
-
Leu
TAG
[ENA]
¡û
>W1710609818
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1868325
1868241
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK