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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182194 (17 seq.)
>WENV182272467
OHUH01002273
[OHUH] human gut metagenome; feces
181
96
-
Leu
GAG
[ENA]
¡û
>WENV182278075
OHUS01000946
[OHUS] human gut metagenome; feces
142
227
+
Leu
GAG
[ENA]
¡û
>WENV182287973
OHVT01000297
[OHVT] human gut metagenome; feces
20214
20299
+
Leu
GAG
[ENA]
¡û
>WENV182301081
OHWR01000323
[OHWR] human gut metagenome; feces
20214
20299
+
Leu
GAG
[ENA]
¡û
>WENV182304806
OHXA01001036
[OHXA] human gut metagenome; feces
118
203
+
Leu
GAG
[ENA]
¡û
>WENV182338386
OHZZ01000767
[OHZZ] human gut metagenome; feces
142
227
+
Leu
GAG
[ENA]
¡û
>WENV182344865
OIAM01000922
[OIAM] human gut metagenome; feces
142
227
+
Leu
GAG
[ENA]
¡û
>WENV182349341
OIBC01000208
[OIBC] human gut metagenome; feces
20214
20299
+
Leu
GAG
[ENA]
¡û
>WENV182366805
OICL01000363
[OICL] human gut metagenome; feces
20214
20299
+
Leu
GAG
[ENA]
¡û
>WENV182367806
OICM01000223
[OICM] human gut metagenome; feces
18969
19054
+
Leu
GAG
[ENA]
¡û
>WENV182374332
OIDB01000185
[OIDB] human gut metagenome; feces
5754
5669
-
Leu
GAG
[ENA]
¡û
>WENV182515741
OIWN01003007
[OIWN] human gut metagenome; faeces
5528
5443
-
Leu
GAG
[ENA]
¡û
>WENV182674081
OJNP01002334
[OJNP] human gut metagenome; human gut
7132
7217
+
Leu
GAG
[ENA]
¡û
>WENV182680608
OJNU01002233
[OJNU] human gut metagenome; human gut
7114
7199
+
Leu
GAG
[ENA]
¡û
>WENV182696234
OJOK01001898
[OJOK] human gut metagenome; human gut
7094
7179
+
Leu
GAG
[ENA]
¡û
>WENV182921608
OKUC01000318
[OKUC] human gut metagenome; feces
5754
5669
-
Leu
GAG
[ENA]
¡û
>WENV182924131
OKUG01000223
[OKUG] human gut metagenome; feces
18969
19054
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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