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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182279 (48 seq.)
>W1711078266
LSMS01000102
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
3299
3375
+
Arg
TCT
[ENA]
¡û
>W1711624656
MPHL01000004
Gammaproteobacteria
Colwellia sp. UCD-KL20 [MPHL]
58009
57933
-
Arg
TCT
[ENA]
¡û
>W1711767446
MUZV01000004
Gammaproteobacteria
Cognaticolwellia aestuarii [MUZV]
162343
162267
-
Arg
TCT
[ENA]
¡û
>W1711947503
NBOD01000005
Gammaproteobacteria
Cognaticolwellia aestuarii [NBOD]
162375
162299
-
Arg
TCT
[ENA]
¡û
>W1711947545
NBOE01000002
Gammaproteobacteria
Colwellia polaris [NBOE]
411161
411237
+
Arg
TCT
[ENA]
¡û
>W1711947635
NBOF01000003
Gammaproteobacteria
Cognaticolwellia mytili [NBOF]
476656
476732
+
Arg
TCT
[ENA]
¡û
>W1711947699
NBOG01000002
Gammaproteobacteria
Cognaticolwellia sediminilitoris [NBOG]
208147
208223
+
Arg
TCT
[ENA]
¡û
>C171034461
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
3087257
3087333
+
Arg
TCT
-
¡û
>C171108361
CP020465
Gammaproteobacteria
Cognaticolwellia beringensis NB097-1 [CP020465]
3104230
3104306
+
Arg
TCT
-
¡û
>C006832
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
3953408
3953332
-
Arg
TCT
[Ensembl]
¡û
>WENV180585216
OCOK01039967
[OCOK] marine metagenome; ENVO:00002010
270
194
-
Arg
TCT
[ENA]
¢þ
>WENV182546323
OJBO01009610
[OJBO] seawater metagenome; Sea water
1118
1042
-
Arg
TCT
[ENA]
¢þ
>WENV182551668
OJCF01002515
[OJCF] seawater metagenome; Sea water
157
81
-
Arg
TCT
[ENA]
¢þ
>WENV182554585
OJCW01000005
[OJCW] seawater metagenome; Sea water
58444
58368
-
Arg
TCT
[ENA]
¢þ
>WENV182556819
OJDH01000167
[OJDH] seawater metagenome; Sea water
26168
26244
+
Arg
TCT
[ENA]
¢þ
>WENV182558609
OJDN01000015
[OJDN] seawater metagenome; Sea water
64221
64145
-
Arg
TCT
[ENA]
¢þ
>WENV182559969
OJDR01000040
[OJDR] seawater metagenome; Sea water
4779
4855
+
Arg
TCT
[ENA]
¢þ
>WENV182561192
OJDV01012960
[OJDV] seawater metagenome; Sea water
79
155
+
Arg
TCT
[ENA]
¢þ
>WENV182568171
OJEQ01004552
[OJEQ] seawater metagenome; Sea water
237
161
-
Arg
TCT
[ENA]
¢þ
>WENV182568281
OJET01000030
[OJET] seawater metagenome; Sea water
42600
42524
-
Arg
TCT
[ENA]
¢þ
>WENV182568706
OJEW01000765
[OJEW] seawater metagenome; Sea water
224
148
-
Arg
TCT
[ENA]
¢þ
>WENV182574821
OJFS01002449
[OJFS] seawater metagenome; Sea water
1110
1186
+
Arg
TCT
[ENA]
¢þ
>WENV182577820
OJGJ01001562
[OJGJ] seawater metagenome; Sea water
368
444
+
Arg
TCT
[ENA]
¢þ
>WENV182578795
OJGP01003394
[OJGP] seawater metagenome; Sea water
1213
1289
+
Arg
TCT
[ENA]
¢þ
>WENV182580080
OJGU01003090
[OJGU] seawater metagenome; Sea water
3270
3194
-
Arg
TCT
[ENA]
¢þ
>WENV182580870
OJGW01021733
[OJGW] seawater metagenome; Sea water
639
715
+
Arg
TCT
[ENA]
¢þ
>WENV182588653
OJHV01009114
[OJHV] seawater metagenome; Sea water
241
317
+
Arg
TCT
[ENA]
¢þ
>WENV183053754
OLGQ01002940
[OLGQ] seawater metagenome; Sea water
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV183055427
OLHB01005552
[OLHB] seawater metagenome; Sea water
38
114
+
Arg
TCT
[ENA]
¢þ
>WENV183055489
OLHD01000021
[OLHD] seawater metagenome; Sea water
38296
38220
-
Arg
TCT
[ENA]
¢þ
>WENV183056305
OLHI01005851
[OLHI] seawater metagenome; Sea water
988
912
-
Arg
TCT
[ENA]
¢þ
>WENV170704711
LLEM01000316
[LLEM] bioreactor metagenome; day64 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
875
799
-
Arg
TCT
[ENA]
¢þ
>WENV170704894
LLEN01010423
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
198
274
+
Arg
TCT
[ENA]
¢þ
>WENV170780961
MAAB01028896
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
65696
65620
-
Arg
TCT
[ENA]
¢þ
>WENV170781084
MAAB01029362
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
101346
101422
+
Arg
TCT
[ENA]
¢þ
>WENV170782458
MAAC01010053
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7712
7636
-
Arg
TCT
[ENA]
¢þ
>WENV170783645
MAAC01018307
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
72162
72086
-
Arg
TCT
[ENA]
¢þ
>C181169918
CP028924
Gammaproteobacteria
Colwellia sp. Arc7-D [CP028924]
1059161
1059237
+
Arg
TCT
-
¡û
>C191128327
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
1079767
1079843
+
Arg
TCT
-
¡û
>C191130464
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
3974830
3974906
+
Arg
TCT
-
¡û
>W1911770222
QXIO01000007
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
109899
109975
+
Arg
TCT
[ENA]
¡û
>W1810155981
PJBA01000006
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
125272
125348
+
Arg
TCT
[ENA]
¡û
>W1810735902
QOLD01000069
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
24483
24559
+
Arg
TCT
[ENA]
¡û
>W1511533740
JYNI01000019
Gammaproteobacteria
Thalassomonas actiniarum A5K-106 [JYNI]
170070
170146
+
Arg
TCT
[ENA]
¡û
>W1511533808
JYNJ01000023
Gammaproteobacteria
Thalassomonas viridans XOM25 [JYNJ]
192
116
-
Arg
TCT
[ENA]
¡û
>W1511586708
LAZL01000009
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
34046
33970
-
Arg
TCT
[ENA]
¡û
>W1610917282
LSMS01000102
Gammaproteobacteria
Colwellia sp. Phe_37 [LSMS]
3299
3375
+
Arg
TCT
[ENA]
¡û
>W1710545229
FOBI01000001
Gammaproteobacteria
Colwellia chukchiensis [FOBI]
294914
294838
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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